RNA id: XM_043244521.1


Basic Information

Item Value
RNA id XM_043244521.1
length 3247
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC122348711
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22240381 ~ 22270734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCTCACTGTAGCCTACAGTCATTCACCTTGTGCGGCTGTCTGTATGACTGTATGCGATTCCGTTGCGTGACGACAAAGACGTTACCATCAGAATCCGCGTCTGCTGATCTGCTGTCTTTTGAATCCATACACAATACGAAACAGAACcgttgtcatttttttggagATACCGGTTTTAAGGAGCTCCGCCTGACCAAAACACCGGgatCCTCAAGCGACTGGCTGCCAAATCCATGAACAGGAAAATACGAGACCTCACAGAAGCCTGGTGAAAATGGAAGTAGCTGTACCAGAGGAACCTCAGAAGAAAATCTTTCGTGCACGGAAAACGATGAAGATGAGCGATCGGCAGCAACTGGAAGCTCTGCATAACACCTTGGCAGCCGCCACCTCCGGCTCCGCCTCTTActcatcatcttcctcctcaCCACCTCAGACACCACTGGTCAACGGCGCCCACAGCgaaaaggagaaagagaaagtcaAGGAGAAAGATTCGAATCATAAAGAGGCCGACTTGATATCACCTGCTCCCGGTTCCCCTTCTCCGTCTTTCACCCTCTCTCGATCTCCCTCTCCACCCAACACACAAACTACCTCACCTTCTATGGATATTGACGACCCCCTTGTGGCGGCAGAAGAGAAAAAGGAGACAAGCAATAAAAgttcctcctcttctctttctGCTTCCCCCTCTGGGTTGCACTGTGATCCAGAGGTTAAGGAAGGATTTCTGTGCTTGAGCGAAGAGGATGAAATCCAAgcagaaaaagatgaaaagaaagacaaTAGTGGGGAGAAGATGAATGTAGATGACGAGAAAGAGGaccaaaaagaggaaaaaagcacTTCAGAGAATGCAGGAGCAGACAACAGTGCCTCTGCTGGTACAAAGCGATCGTTGTCAGAGAAGGATGAAGATGACAAAGAAATCAAGGATGAGAGAGATGGGAAACGTGCAAGGCTGGACGGTGAGGAGCTGGAGGCTCAGCTAGAGCTGAAAATCACGGCCAATGCTGGGAGCCGGCATAAACTGGAGAAGATGGTACAGCAGTTAGTGGAGGAGCGGTTAAGGGTGCTGCAGTTGACTGTGTTTGACCGAAGCATAAAAGAGCTAAAAGAGAGAGTGGAGAAGATTGACAACGCAACCAAACAACAGAATACAATGCAGCATATTAACACACTACAGGCTAAGATTTCTCGGCTGGCCAAAAAGTTTGGTGCGGCTAATCAGGCTTCTGAGAACTCAAAGAGAAGTCAAgagGCTCATgctgccgctgctgctgctcagGCTAACAATGCAACCAACATGACTACACCGCAACGTACTGTTAAAACCACAATGGATCCCAAACTGTCCAATCCAGCCACTGGATCTAATTCAACTGCAATCCCAGCCCAGCCTAAACCTCTGTCCACTCCGACTACTCCAACTTCCTCCGCTCTAGCTTCTCCTGCACCCATTCTACAGATcatttcaacaacaacaaactccACTCCCTCATCCACCTCTTTGCCTGGCCAGTCTCAGACAGGCACCCTACTACTAAAGACTGGACCCAGTACAGGGGTCATGACTAACACCCCAGCGACTTCAGGGGGTCAGTCGGTGGCTATTCAGCCTCTTTTGATTCAGCTGCCTTTAGCGATGGCGAATGGGCAAAGCGGGGCATTGGTCAATACTGCCAGTGGTGTCGGTTTGATACCGGTGTCCTCGTTATCTACGGTTAGTAGCAACAATAAGGCAAAGACGACTACGCCTGCTACCACCTTCATCCTTCAGAAGCCGGCGGGCAGTGTTGTTTCGTCGTCTTCAACCTCGTCAGCTCCAGCTGTGTCCTTAGCGAGAGCCGTGTATCCGGGTGGCACAGGGACTGTTAGTTCACCCAGCACAGGGATATCGGTGACTACGGCCCGAACACCTACGCAGTGCGCAGCTGTTGTGGGAGTGTCTACAGCGGCCTCTTCTCCAGGAACCACGGGGCCCGCCGCGACGGGATCAGCAGCAGCTGCAGCTGGTCCACCATCGGCTTCAGCGCTGGCCTCAAAGACAGataATCAGGCTTCAACACCGAAGACACCCTCTCAGACTGGGCGGCCCAAAGGTTCTGTAATAGATCTGactgaagatgatgatgatgttcaAGTGACCGGAGTCCAGAAGGCCACTGTTTCTCCCATCACTACCCAGCGTGCATCTGGGCCGCCTCCTTTAGTCAGCTCTACCACTAATTCCGGAGCAAGATCAGCGCAACGTTCCTCTGTGGATTCTCCATCTCAATCTCGTCCGAGCTCTTCTTCCTCGAGCGCTCTTCCTCCATTACCACTGGCGCCATCGCCGCCGGCGCGTCTCCCCCCCGAAGCCGCCCACACGTCCCCTCCCCAGCAGCCCCAGCTCAAACTGGCCCGCGTCCAGAGCCAAAACGGGATCGTCCTGTCCTGGTGTGTTGCAGAAACTGACCGCAACTGCGCTGCTGTAGATACCTATCACCTGTACGCCTATCACCAGGACCACCAGGGGGCAGCATCGGGCGCCTCGACTCAATCACTATGGAAGAAGATCGGGGAGGTGAAGGCTCTGCCGCTGCCCATGGCATGCACCTTGACCCAATTTGTGTCCGGGTCGACATATTATTTTGCCGTCAGGGCCAAAGATGTGTATGGCCGCTTCGGTCCTTTCTGTGAACCGCAGTGCACTGACGTCATTAACCCAGCGTCTTCTCCATCATCCTAAGATAATTCCAGATGAGGGTGGGGTGGTGGCTGCTGGAGGTATGACGGGAGATTTGTAATTGTTACAAAATTGTTAACTATGCGCAGACCACTGGTTTAGTCTTGCCCTTTGTGTTAGGAATCGTAGGGAATTTAAATAGGTTGTCTAATGCAAATGGAAATACGAATAATCATCAGtgcatacagacacacatacactatttgtttcaactttattttacaataaggaGGGAACTATCAGATTTAAATTGTGCTTGAAATCGTATTTTCCTTGTGCAGAATGTTCAGAGTTAagtattgtttttgaatttcttttttttttttctttccatttttattttttttaataaaatgatgataTTCAATACATTGCACAGATGTTCCATTATAGGTCCCGGTCATTAGCTACAGGACAGAAAAGCTGGGGTGTTAAaggttttgtattgttttttgtctgGTACCCAGACACTGCAAAATGACACTCAATAAAAagtattgatatatttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7636 lncRNA downstream 196244 22043902 ~ 22044137 (-) True G5327
TU7183 lncRNA downstream 619800 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 689146 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 829810 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 1521491 20718232 ~ 20718890 (-) False LOC122349798
TU7670 lncRNA upstream 14428 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 14486 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 77782 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 77782 22348514 ~ 22382972 (-) True G5366
TU7709 lncRNA upstream 141730 22412462 ~ 22413930 (-) False G5368
XM_043246587.1 mRNA downstream 4859 22146210 ~ 22235522 (-) True grin2bb
XM_043240991.1 mRNA downstream 104346 22132862 ~ 22136035 (-) True si:ch211-243a20.4
XM_043240979.1 mRNA downstream 107651 22128343 ~ 22132730 (-) False f8a
XM_043240972.1 mRNA downstream 107652 22128343 ~ 22132729 (-) True f8a
XM_043236762.1 mRNA downstream 117532 22119346 ~ 22122849 (-) True si:ch73-90k17.1
XM_043244464.1 mRNA upstream 2086 22272818 ~ 22284949 (-) False LOC122348696
XM_043244489.1 mRNA upstream 2086 22272818 ~ 22282054 (-) False LOC122348696
XM_043244482.1 mRNA upstream 2086 22272818 ~ 22280938 (-) False LOC122348696
XM_043244473.1 mRNA upstream 3254 22273986 ~ 22287521 (-) True LOC122348696
XM_043244559.1 mRNA upstream 17950 22288682 ~ 22293361 (-) False serhl
unassigned_transcript_106 other downstream 356191 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 443943 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 467619 21724387 ~ 21772762 (-) True G5108
TU7263 other downstream 474097 21720060 ~ 21766284 (-) True G5104
TU7773 other upstream 268952 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 643168 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1501891 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1501891 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1762131 24032863 ~ 24034499 (-) False G5624

Expression Profile