RNA id: XM_043244828.1


Basic Information

Item Value
RNA id XM_043244828.1
length 2781
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC122348936
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21833362 ~ 21847155 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCCCAAACATCCTCAAatgCATCAACCGCAACTGTGCCTGACTCCACAACAAGTACTGATGCATCAACAACTTTGGCTACCAATGTCTTACTTCAGTCATCATCAACTCTGgcaccaacatcaacaacatctgaTGCAACAACCACAACTCTGCTTGACACCAATACAACTATTGATGTGACAACAACTTTATCTTCCCAATCCACCGAATCAACATCCTCAACTATTGCACCAACAGCGACAGCATCTGTTGCTTCTACTACAGATCTGTCTGACACCACAACAAGTACAGATACAACAACatctttggcttccacaaccaccACTCAATCATCACCACATATTTCAACAAGATCAATAGCTAATGGAGAAACAACAACTGTGACTGAGACCACAATATCTAGTTATGCGACAACAACTTTGGATTCAGGAACCGCACCGCTAATTGTAACAACTGATGCATCAACCACAAGTCTGTCTGACAGCACCACATCTACAGATGCAACAACaactttggcttccacaaccatgccccaaacatcctcaagtatttcaacgtctagtggagcaacaacaactgtgcctgacagtacaaaatctTCATCATCAACTCTGgcaccaacatcaacaacatctgaTGCAACAACCACAACTCTGCTTGACACCAATACAACTATTGATGTGACAACAACTTTATCTTCCCAATCCACCGAATCAACATCATCAACTATTGCACCAACATCGACAGCATCTGTTGCTTCTACTACAGATCTGTCTGACACCACAACAAGTACAGATACAACAACatctttggcttccacaaccaccGCTCAATCATCATCACATACTTCACCAACATCAATAGCTAATGGAGAAACAACAACTGTGACTGAGACCACAATATCTAGTTATGCGACAACAACTTTGGATTCAGGAACCGCACCGCTAATTGTAACAACTGATGCATCAACCACAAGTCTGTCTGACAGCACCACATCTACAGATGCAACAACaactttggcttccacaaccatgccccaaacatcctcaagtatttcaacgtctagtggagcaacaacaactgtgcctgacagtacaaaatctagtgatacagatgCATCAACCGCAACTGTGCCTGACTCCACAACAAGTACTGATGCATCAACAACTTTGGCTACCAATGTCTTACTTCAGTCATCATCAACTCTGgcaccaacatcaacaacatctgaTGCAACAACCACAACTCTGCTTGACACCAATACAACTATTGATGTGACAACAACTTTATCTTCCCAATCCACCGAATCAACATCATCAACTATTGCACCAACATCGACAGCATCTGTTGCTTCTACTACAGATCTGTCTGACACCACAACAAGTACAGATACAACAACatctttggcttccacaaccaccGCTCAGTCATCATCACATACTTCACCAACATCAATAGCTAATGGAGAAACAACAACTGTGACTGAGACCACAATATCTAGTTATGCGACAACAACTTTGGATTCAGGAACCGCACCGCTAATTGTAACAACTGATGCATCAACCACAAGTCTGTCTGACAGCACCACATCTACAGATGCAACAACaactttggcttccacaaccatgccccaaacatcctcaagtattTCATCATCAACTCTGgcaccaacatcaacaacatctgaTGCAACAACCACAACTCTGCTTGACACCAATACAACTATTGATGTGACAACAACTTTATCTTCCCAATCCACCGAATCAACATCATCAACTATTGCACCAACATCGACAGCATCTGTTGCTTCTACTACAGATCTGTCTGACACCACAACAAGTACAGATACAACAACatctttggcttccacaaccaccGCTCAATCATCATCACATACTTCACCAACATCAATAGCTAATGGAGAAACAACAACTGTGACTGAGACCACAATATCTAGTTATGCGACAACAACTTTGGATTCAGGAACCGCACCGCTAATTGTAACAACTGATGCATCAACCACAAGTCTGTCTGACAGCACCACATCTACAGATGCAACAACaactttggcttccacaaccatgccccaaacatcctcaagtattacgtctagtggagcaacaacaactgtgcctgacagtacaaaatctagtgatgcaaacatttcagattccacaaccactcctgtaatattaatcacagatgCATCAACCGCAACTGTGCCTGACTCCACAACAAGTACTGATGCATCAACAACTTTGGCTACCAATGTCTTACTTCAGTCATCATCAACTCTGgcaccaacatcaacaacatctgaTGCAACAACCACAACTCTGCTTGACACCAATACAACTATTGATGTGACAACAACTTTATCTTCCCAATCCACCGAATCAACATCATCAACTATTGCACCAACATCGACAGCATCTGTTGCTTCTACTACAGATCTGTCTGACACCACAACAAGTACAGATACAACAACatctttggcttccacaaccaccGCTCAGTCATCATCACATACTTCACCAACATCAATAGCTAATGGAGAAACAACAACTGTGACTGAGACCACAATATCTAGTTATGCGACAACAACTTTGGATTCAGGAACCGCACCGCTAATTGTAACAACTGATGCATCAACCACAAGTCTGTCTGACAGCACCACATCTACAGATGCAACAACaactttggcttccacaaccatgccccaaacatcctcaagtattgTCATCATCAACTCTGgcaccaacatcaacaacatctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7183 lncRNA downstream 212781 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 282127 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 422791 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 1114472 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 1114489 20711230 ~ 20718873 (-) True LOC122349798
TU7636 lncRNA upstream 196747 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 438005 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 438063 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 501359 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 501359 22348514 ~ 22382972 (-) True G5366
XM_043244817.1 mRNA downstream 428 21827556 ~ 21832934 (-) True LOC122348927
XM_043244807.1 mRNA downstream 20773 21808791 ~ 21812589 (-) True LOC122348917
XM_043244797.1 mRNA downstream 33618 21761881 ~ 21799744 (-) True LOC122348907
XM_043244789.1 mRNA downstream 76496 21738022 ~ 21756866 (-) True muc13a
XM_043244779.1 mRNA downstream 96654 21734334 ~ 21736708 (-) True LOC122348885
XM_043248080.1 mRNA upstream 19837 21866992 ~ 21882353 (-) True dtx4b
XM_043248092.1 mRNA upstream 43197 21890352 ~ 21900526 (-) True smu1b
XM_043248130.1 mRNA upstream 54312 21901467 ~ 21905151 (-) True rps6
XM_043238887.1 mRNA upstream 58546 21905701 ~ 21906555 (-) True LOC122345057
XM_043249473.1 mRNA upstream 99706 21946861 ~ 21951154 (-) True zgc:111983
TU7268 other downstream 36924 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 60600 21724387 ~ 21772762 (-) True G5108
TU7263 other downstream 67078 21720060 ~ 21766284 (-) True G5104
TU7256 other downstream 110297 21719100 ~ 21723065 (-) False G5104
unassigned_transcript_106 other upstream 36963 21884118 ~ 21884190 (-) True trnat-ugu
TU7673 other upstream 412284 22259439 ~ 22328929 (-) True G5356
TU7773 other upstream 692529 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 1066745 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1925468 23772623 ~ 23916448 (-) False LOC122351696

Expression Profile