RNA id: XM_043244839.1


Basic Information

Item Value
RNA id XM_043244839.1
length 2063
RNA type mRNA
GC content 0.42
exon number 7
gene id c1h19orf67
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22332974 ~ 22336292 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTAAAGCAGAGCACGCGGAGTGGAAGTCTTTGCTATCCGAAGAAAATGAAGCATCCCGGTGTCTGTCAGAATCAGAAACGACTACACACGCTCTTGAAGATGTCGGTGCAATGGCGCCCTCGTTCGGTGATGAGAGGTATTTTTTAGTTGAAGGCGCAGAAGCTCAGGATAAGAGAATAATGGATGCAAAAATCTCTCCCATTGAACGGCAACTTGAGTACTTGCTGAACAAGGCTGACGAGTTTCAAACACAGCTTCTGTGGAGtcgAGAGTGCCTCCAGAATTATGGGTTTGCCCATATCGTCCCCATGTTTTTGCAAACTTGTCAGCCGTACTTCACTTACCTGGAGTCCACAGCCAGAAACTCCCACCCCTTCCGTCCAGCTCTGTCCACATACATCCGTGCACAACTTTTGCAGTTTTCTCAGCAACTGTGTTCTCGTCTGGAGCAGCTGGTGTTGCTGTACGCCTCCTTCAGTTTGTTCTCACTGGAGGAATCTGATCCACTGAGtatctCTCACTTCTTTATTGGCCAGTGTCAAATAGACAACACGAAGCTGTCAATCTTCCGGTACAGTTGCCCCACTCCTTTTCTCACATCAGCCTGTACTGGCTTATACAAACGTATGCGCTGGAATGTGGAGCGACAAATAGAGGGAGAAGGACAGACGTATGACAGTGCAGAGTTTTATTTCCTGTGCTGCGAGGATGTCATTAAGGCAGCAGACGATAAGGATGTAGACGGAAAGCGTGAGGAGGAAAATACAGAAACCGACAGAGAGAGTAGAGCACAAAGGATTTGGTCAATTGGCTGGTGGATTCAGACATACCCTGATCCAGACACAGAGGACATCACTGATtgGGTGCTGTGTTTAGTTCCTTTCGGTCAGTATAAACAGCTGTTGTGCCTGGGAAGTGAGGAGCCTTCATCCTGCACTGCCACAGACTGTCTTCTGGGGGTGCTGCTGTCTCAGGAAACAGATTTGGCACAAAAACCTGAGGTGGCGCTCAGTTAGAGCCTCACCCGGTCTGGACAGAGCATTTGGTTTATTGAAATCAGATGAGAGCACAGATAGAAGTTTAAAAACCTAACGTCAGTACATGTTTCAAAAGGTTTGTTGGTTCATGGCTGTTATCGTGCTACGTTGGTTGTTATGTGGTAAATAATTTACACTAGTGATGGAAAGTTAAACAGAGTGAAAGTTAAAGTTGGTTTgacatttaatctttattttttatgaaaacattaaaatacagagGCCATCCAAGTAGTCTGTTACAAAATCCAGAAATAAAACCTGCTGGCAGTCAGAGCCTGCTGCCTTCTTTTCtctataaaacaaagaaataaagcaatccttcctttcaaaataataaattacaaaaatatacacaataaaaggTGGAATATCTACCACACAGAAGTAGTTATGTCTTTGCACAGTTGTTGGAAAACATAGTAAAGATCAGTGGAGAGAGCAGAGCATTATAAACAATGCAGTTGTGTTCCTTCATACGTCTCATTGTAAATCAGCCCAGTCAAAGCTAATCTCAGTGCATTTTTACTGCtggcttgtgtgtgtatacagtaggTTTCTCTGTATGGTATTTGTATCTGTGATATGTCAAGTTATTCAACAGTAGTTAAGCcaaaatacagtgaaagtcagAATCTACCTGGAATCCCTGTGTTCCCTGATTATAATGTAAAGCGGTTCCTTtgatatatatactaaaaaaggtttgaattaaataaatgctactaCATTTACAGTGTCAAACAGTACTATACAGTCTCTAAACTACTTCACAGCACTAATAGACAAATAGGCAGTACAACAGTACAgtacaaatgaaattaaaaccgTAATCTCTCTTCATAATACAGTAAACAGACTTCatcactgtccctttaaattaatatacatgCACCATCACACGACAAAACATAATAGGGGCTCCAATAATCAAATTGTGCTTTAACATTCCACTGGGCCACGATCAATCAATTCATTCAGTCAGACTTGTGACAGACAAAACTCCTCACCAGactcaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7670 lncRNA downstream 45841 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA downstream 45841 22285218 ~ 22287133 (-) False LOC122348696
TU7636 lncRNA downstream 288837 22043902 ~ 22044137 (-) True G5327
TU7183 lncRNA downstream 712393 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 781739 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7696 lncRNA upstream 12222 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 12222 22348514 ~ 22382972 (-) True G5366
TU7709 lncRNA upstream 76170 22412462 ~ 22413930 (-) False G5368
TU7712 lncRNA upstream 76170 22412462 ~ 22414007 (-) True G5368
TU7752 lncRNA upstream 98321 22434613 ~ 22438354 (-) True G5395
XM_043244559.1 mRNA downstream 39613 22288682 ~ 22293361 (-) False serhl
XM_043244568.1 mRNA downstream 39753 22288682 ~ 22293221 (-) True serhl
XM_043244473.1 mRNA downstream 45453 22273986 ~ 22287521 (-) True LOC122348696
XM_043244464.1 mRNA downstream 48025 22272818 ~ 22284949 (-) False LOC122348696
XM_043244489.1 mRNA downstream 50920 22272818 ~ 22282054 (-) False LOC122348696
XM_043234708.1 mRNA upstream 49221 22385513 ~ 22411664 (-) True pnpla6
XM_043234725.1 mRNA upstream 49221 22385513 ~ 22411587 (-) False pnpla6
XM_043234703.1 mRNA upstream 49221 22385513 ~ 22411585 (-) False pnpla6
XM_043234715.1 mRNA upstream 49221 22385513 ~ 22411549 (-) False pnpla6
XM_043234721.1 mRNA upstream 49221 22385513 ~ 22411469 (-) False pnpla6
TU7673 other downstream 4045 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 448784 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 536536 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 560212 21724387 ~ 21772762 (-) True G5108
TU7263 other downstream 566690 21720060 ~ 21766284 (-) True G5104
TU7773 other upstream 203392 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 577608 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1436331 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1436331 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1696571 24032863 ~ 24034499 (-) False G5624

Expression Profile