RNA id: XM_043245252.1


Basic Information

Item Value
RNA id XM_043245252.1
length 4653
RNA type mRNA
GC content 0.42
exon number 1
gene id adra2c
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19911680 ~ 19916332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGAGATTTACAAATGAGACACATCGCAAGCAATGTGTCATAAGAGCCAACAATAACTGTTGTACACTGTGCCAGAAGTACACAGATTAAGCTAGACACTTTTACTAGGACTGCACATTTGTACATTTCACCCTTCACACAACCACtattttaaaccatttcatTTTGACATGTAACGAGAACATTTGGtttaattagcaaaataaaGCAGAATCTTTTCATCTTGTCTTTTCAATTTGGTAGTGTTaagaatatttttcattttacagaaaacCAAGTTTCGTGTTTGATATTTGATTCGGAAAATACCTTAGTCAACATTAAGAGAAACTAAATCAGACAAAAACTAACTGACATGCAAACTAAACTGACATAAAGTCCATAAATCAAATGTTAGTGCGATCAATGGAGATATGCCACTAGAGAGGTTGTGACTATTTAGACAGTATAGCGTAATTATTTATGtagctaaataaatgtatacaatgcCATTTACCATAGCAACAACATGTTCTctttaaacaaaccaaaacaaaaagccTGAATGAACTTGGTCTTTCAGATCAGGATAAGATACAGTAGTTTAGAAGCCACTGCCACGTGACGCCTTTATAAAAAATGACCTGGACTTTATTTGAACTTCATTGGACATCATTGATAAGTTTCCTgccttctgcctgtctctctcAGGTGCCCCACTCTTTAACAGGTGCCATGGCCACCTCTATGACCTCTCTGATGGGCCTTTCACAAAATCATTGATTAGTTCCTGTCCATTGCAGTCTATCATGCTCTGCAGTATGTTGACAAATTGCAagtgccctctctctctctctctctctctctctctctctctctctctctctcacatacacacacacacacaaacactgtgcTGTATATAGTACAGTAAACAATACAGCCAACTTACCATATGAGATAAAATGGCAACACTATAGactgatttcattttaatgctaCAGGAAAATACCATTTTATATCCTGCTTTgaacataatttataaaataaaaacaaaacaaaccagtaGCAAACAGGTGCATCAAATAATTTGTactacagtatatattaaattaagtaCAGATGCGAATTAAACATTTGTCAATTGTGAAATGAAAGTATGTCTAGATAAAacgtttcatttaaagcatgcTGAAATGTTTGTGGGAATACTGCATTGTTGATTATCTGTTTTGagattatatattacaattcaaCACTTACCTGTCAAAATAACACCAAAGTTAATACaaagatatataataataataataattgaagcCAAGTCACATAGGTGATGAGGAAAGTAGCctatatgattatatttaatttgacgGTGTTTCACATTATTCAAAGCCACAATGGCATTGTTACAACAGTGACACCCAGCGAGCAAAGATGCCGAAAGCTATAGTTTCTTCACAGTTCACTTTTTCACCTCTTAACAACGTTATTCCTGACAACGCCTAttgctataaaataatataaaagaacgTATTTTCCTCTCAGGGTAGCGCAGTGCCCATCGCATGTTTGCCCGAGTTATAGTTCTTGCTGTCTGTTCAGAGACGCGTAATGATGAAATACTGAAACGCAAGCTCTCGCTACGTTAAATGTTCACCGTAACATGGAGAACGACGCTAAACGGTGGTAGGGTACTTCAGCAGTCAGTAGTTCTCTCCAGGGGCGGGGCGGCGCTCCATCAGTTTAATGCTGTCAGCACGTGGATAGTTGAGTCCCGGCGGTGTTTTGCTCGGGTGGATGCTGAGAGAGACGCCCGCGAGAGGACGAGCAGGTCGCACGGATGTAAGAGTCGGCGATGCTTACTTCAAACTCACCACGGGATGGGTGTCCGCGACCAAACGAGCCGTAAGAGGAATTGTGCGGAAAAGAAAAAGACGCGAACGGGATTAAAATAAGAACACAAGGTAAGAAGAAGCATAGAGGAACCTGCAAATAACTTatagtgaaattaaaaaaaaaaaaaaaaaaagagagaatattCGCGAAGACGCGCGCGGACGATTTATTGGACGGCAGAGCTTTTTCTAAATCAATATGCATAACTTAAGCTTTGCGAGCGAAGCGGACACTTACATTGACATTGGTTTAACATCCTCTGGGAATTCTACAAGTCGCTATTCTCCGGCGACCATTATAGGGCTCGCGGGGCTGGTGAGCTTCCTCATCTTGTTTACGATAGTGGGGAACGTGCTGGTCGTTATCGCCGTTTTAACGAGCAGAGCGCTCAAGCCACCGCAAAACCTTTTTCTTGTGTCTCTAGCCAGTGCGGACATTCTGGTGGCCACCCTCATAATCCCTTTCTCTCTGGCCAATGAATTAATGGGCTACTGGTTTTTTGGGAAAGTTTGGTGCGACATCTATCTAGCGCTAGATGTTCTTTTCTGCACATCTTCTATTGTTCACCTGTGTGCCATAAGTCTGGACAGGTACTGGTCTGTAACACAGGCGGTCGAGTATAACTTGAAGCGGACGCCTCGCAGGGTAAAGGGCATGATTGTGGTGGTGTGGTTGATCGCGGCTGTAATCTCCTTCCCACCGCTCATCTCCATGGACCGGAATAATGAGGGTGACAGCAGCGAACCACAATGCCAGCTGAACGACCACACGTGGTACATCCTGTACTCCAGCATCGGGTCGTTCTTTGCCCCGTGTGTCATCATGATCCTCGTTTACATCCGAATCTACCAGGTGGCTAAGACGAGAACTCGAAATATGTCTGAAAAGCGCCGCGATCCGGATGGAGGACCAGGAACGCCACGGCTGGAGAACGGCTTGAGCCGCGAGGATTCCAGGCGGGAAAACGGGCACTGTGCCTCGCCGCCACCAGGGGAGCGCAAACCAGGCGAGGATGACCCAGATGCCGAACTAGAGGACAGCAGCTCGTCTGACGAGAAGGCCAAGCGGGCGCAAACCGAGACGGCGCCCTCCCGAAAAGACCGCCGGTCCAGCCGCAAGAACAGCTCCAGCTCCAAGCATTCCAGCCGGAAATCCCGAGCCAGCAGCAAGTCCCTAGACTTGTTTTCCTCCCGCAGGAAAAGACGGAACACCATTTCGAGAAAAAAGATTTCCCAGGCACGAGAGAAGCGGTTCACCTTTGTGCTGGCCGTGGTCATGGGGGTGTTCGTGGTCTGCTGGTTTCCATTTTTCTTCAGCTACAGCCTGTACGGGATCTGCCGGGAGCCCTGTGCTATCCATGACACCCTTTTCAAGTTCTTCTTCTGGATCGGATACTGCAACAGCTCTCTCAATCCCGTCATCTACACCATCTTCAACCAGGACTTCCGGAGAGCTTTTCAGAAGATCCTGTGCAAGTCCTGGAAGAGGTCTTTTTAGAGGACATGGGCAGCTATTTGCAGCATCCAGTGCCATTTACAGGTGGTTGAAAAGGAAGAGACGTTTTCAATACACcactgcctctctctctttgcatTGACAATCTGTACACAACAatgacattgatttttttttctactttgttGTGTAAAGCTCTTCATGAGCCTGTGAGGACAACAGATGCTGGTCACATAGGTGGTACCAAAagctaaaaatgcttaaaaaaaaagcccaccTGAATTGGGAAGCACTGCACTGCATTAGAGGAAACAGGCTTGTCTTTATTATGGCTGCAGGCACTCTGAAGTTATCAAGAGATATTTTTATGATGAGTTTGCACATATGGCTTGTGTCATTGTGACTAGAGAGCTATGTAACATGAAAGGCTGTGTCCTTTTATatggtcacaaaaaaaaagacaaaaaagggaAGTGAATTACCAAGAAGTGTGCCGTTTCTTTCTAGCGGAGAGATACAAAACGGACAATGTTGTTTAGGGAGTATGAGAAGGTTGTCGCCGGATGACAGATGGAGGAAGAATGTTGCCCTGATGTGCTTGGGTATTGCGATGTTCGTCCTAAGGGTGCAAAATCCTGACTGAACAGAGCTCTATTACAAACTATTCTTAATCGTCCTTCAGTGAAATGAATCACTGCACTGCTGCTCTCTAATATGCCATAAAAAGTACACAGAAGAAGTATATACTGGAGAGTTAAGAGAAACTGTAAGTGGTGATGATGATaaataatgatacatttatttatctacaGGATTTATTTATCAGATTATAAACTATTTAAGCTTCGTGGCTATGCTTGTACAGTGTATCccatttgttcaaaaatatcatagtgatataatgcaaatataatatatgaggctgttgtacatttttaaaagcaaaacaactttttttggttgtttttgtatattatgaAACATCTGTCTTTATGGATGTTGGGCTTCTCTCCTTTTCTATTCCATATACTTGTGATATCTCCAAAATGACTGACAGGTCACTACAAGCACAGCTGATgatcaaacaaaaatgaacaaataaatggatTGTACTTCTCTTGGATTCGCTTTTTACTGTGAACTTTACTGTGAGTCTAGgctttatattttactgttCATGTCTCTAAAGTGGGCTTGTCATAATTAGAAATGACTGtgattaaatattgttttgagcttttgtcattttgcagGTACAATACTCCATTCAGCTCAGAACAGAACGAAATAAAGGGAGAATCTGAACTAATTGAAACGAA

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG:

id description
K22814 Octalpha; octopamine receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6565 lncRNA downstream 102049 19598210 ~ 19809631 (-) True G4609
TU6573 lncRNA downstream 279427 19631098 ~ 19632253 (-) True G4615
TU6568 lncRNA downstream 300165 19608383 ~ 19611515 (-) True G4611
TU6569 lncRNA downstream 300165 19608383 ~ 19611515 (-) False G4611
TU6564 lncRNA downstream 308479 19598210 ~ 19603201 (-) False G4609
TU6634 lncRNA upstream 20058 19936390 ~ 19936759 (-) True G4671
TU6683 lncRNA upstream 21687 19938019 ~ 19938401 (-) True G4713
TU6780 lncRNA upstream 220740 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 239332 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 283663 20199995 ~ 20265069 (-) True G4870
XM_043249777.1 mRNA downstream 28956 19881125 ~ 19882724 (-) True hmx1
XM_043248486.1 mRNA downstream 32029 19878191 ~ 19879651 (-) True hmx4
XM_043251231.1 mRNA downstream 126033 19777091 ~ 19785647 (-) True clgn
XM_043251226.1 mRNA downstream 154324 19665097 ~ 19757356 (-) True maml3
XM_043251230.1 mRNA downstream 287439 19611829 ~ 19624241 (-) True tesk1a
XM_043246091.1 mRNA upstream 50535 19966867 ~ 19984961 (-) True dok7b
XM_043246100.1 mRNA upstream 52527 19968859 ~ 19984964 (-) False dok7b
XM_043242601.1 mRNA upstream 78858 19995190 ~ 20032019 (-) False rgs12b
XM_043242592.1 mRNA upstream 78858 19995190 ~ 20031979 (-) True rgs12b
XM_043242611.1 mRNA upstream 78858 19995190 ~ 20031976 (-) False rgs12b
TU6528 other downstream 372534 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 2031263 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3837760 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4680794 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4882060 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 180623 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 196418 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 196810 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 220740 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 220740 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile