RNA id: XM_043245253.1


Basic Information

Item Value
RNA id XM_043245253.1
length 2048
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122349272
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27887819 ~ 27890576 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttccctccctctgcgacaacttcctgtctgaggactataaattcagtagcaggccactcacctgcaggttgcattgttcgcctgttctattgttgtttctgagtttccttgtgttttcctaGTTGTAGATTCTCTGGTTTTCACCCTGCCTGTCTTCCGTTGTTCgaaccgctcattcgtgacaatATAGTAGTTTAAATTTAGGTAGGGTACATTTTTGCGCAGGcatcattttgattatttagaTCAGACCCACACTGATGTAGGTGGGCTCTGATTCGAAGGCTGCAATTCTGGATCACAGAATCATTTCCTGTCTGACCCTCCCACGTCTACTGCTCACCGCTTccttttatttagactttttttgaAGGGTGTTAACAAATAACTTGTATACCTGtggccaaaaaaatatataggaaCACTGGCCACCCAGAATTATTTGAGTTTAATATATAGTTGCACATCTCTTTTATTCTGCTAAAAGTAAACGTGTAAAAATGGCCTACTATATGGCAATAAGTCAATCAATGTGGTTAACTTAATTATCAATAATAGTAAGTTGTCTATGGTTGCTTGTGTGGGCAGTGACcaagaaagaggaagaaacCTTTGCATCTGTATGGTCTAAAACAAGCCGTCTTAATCATGTGAAATCACTTCAATGTCTGCTGGAGGTCAGACTCACCAGAGCACAGTAAGAGTTTACAATGtgaattattatgtattatttgtgtGAATATAAGATTAATATTGGTATTGTACAACCCACTGACTTGCTGAAGACGTGTGTTTATGTACTAATGTCAGTGAGAATGTCTCTTCCTCTTGCTCTGGCGTTTCTGCTCATGATTTACGGAGTTTATGGCCAATGTGATTGGGGTTTGAGTTATGGCTCTTCACGCATCTGCGCACTAGTGGGGTCAACAGTGACAATCTACTGTAACTATACATACCCTCCTGAACATCAGATCAGAGAAGCAAACTggaccaaaacaaatgaatgctaTCAAGATCTCTTAACGGACCCAGAATACAGTCAGAGGTTTAAGTATctgggagataaagagaaaacTGCACCTAttcatgtgacacagaaagaTGAAGACATGTACTATTTCAGATTCATCACTGATCAGGAAAAATGGCTTGGTCTTCCAGGAGTGACTCTTACTGTGACAGaTCTTCAGGTGGAGTCTcctgagagagtgacagagggAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCGCTCTGACTGACAGAGCAACATTCATCTGGTACAGAAACTCACAGCCATTAActgagagaagagacagaaacaatataCTCCTGCTGCAGTCAGTCAGAAGAGAGGATGCAGGCAGATATAGCTGTGCTCTACAGGAACACACTTACATCTCTCCTGAGGTTTATCTCAATGTCACGTACCCACCCAGGAACGTCTCGGTGTTCATAAAAGGATCTGGTGAAATagtggagggagattcagtgactctgatctgcagcagtgattcaaacccacctgcagaAATCAGCTGGTTTAAAGGAAGAACACTTGTTAGATCTGGAAGAATCTACAGCATCTCAAAGATCAGATCTGATCACAGAGAAAAATACAAGTGCAGGTCCAGAAATAAACATGGAAAGAAATACTCTGAAGCTGTGACTTTAAACGTCATATATGCACCCAGGAACGTCTCAGTGTTCATGAGTGGATCTGGAAATAGTGGAggagattcagtgactctgatctgcagcagtgattcaaacccacctgcTCTGAACTTCTTCTGGTTTAAGGAGAATCAAAGCTCATCTGTTGGATCTGGACAGAGTTTCAGTGCACTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCAACACGGATCTCTGAGATCAGACACTGCTACTGTCACAGTTCACAGAAGTGATGGTAGGACTGTGTTCCAAGTTACATTGGTATCTGGAGTATTATTCATCAtcgttttacttttttataatTCTGagaaaaatgatgaaaagaaGAACTGCAATACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10490 lncRNA downstream 39641 27847715 ~ 27848178 (-) True G7139
TU10424 lncRNA downstream 142524 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 143862 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 239533 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 241094 27646023 ~ 27646725 (-) True G7012
TU10493 lncRNA upstream 1325 27891901 ~ 28073544 (-) False LOC122349330
TU10456 lncRNA upstream 33838 27924414 ~ 27971499 (-) True G7127
TU10421 lncRNA upstream 44405 27934981 ~ 27939452 (-) True G7105
TU10523 lncRNA upstream 66249 27956825 ~ 27957999 (-) True G7156
TU10453 lncRNA upstream 69998 27960574 ~ 28001479 (-) False G7125
XM_043250498.1 mRNA downstream 84770 27794470 ~ 27803049 (-) True LOC122352815
XM_043250551.1 mRNA downstream 122813 27759218 ~ 27765006 (-) False LOC122352823
XM_043245266.1 mRNA upstream 50167 27940743 ~ 27942269 (-) True LOC122349282
XM_043250806.1 mRNA upstream 84704 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 88102 27978678 ~ 27986215 (-) True LOC122352779
XM_043250640.1 mRNA upstream 105835 27996411 ~ 27997642 (-) True LOC122352890
XM_043245297.1 mRNA upstream 108778 27999354 ~ 28026817 (-) True LOC122349305
XR_006250838.1 other downstream 632752 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 685252 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 1084894 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 1084894 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1469940 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 184072 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 353552 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 500463 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 515606 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 633129 28523705 ~ 28525551 (-) True G7527

Expression Profile