RNA id: XM_043245266.1



Basic Information


Item Value
RNA id XM_043245266.1
length 876
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC122349282
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27940743 ~ 27942269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGGATGCTCCGCTGCCGCGTCACCTAACAGACCGGACCCTTCCCATAATTACCAGCTGACACCAGATGAGAGGGGTGGAGCACCAgctagccaatcagaagagaggggcggggccACACCAGCACAAGCGGTCAGGACTCTGCCAGAAAGGGCCTCACCTGCTTCCAGAGAGATGGAGCGAGGCGGAGATGACAGTAAAAATACTTCTGATACTCTGCTTCCTCTCAACCTCTCCAGGGGAGACGCTCCTCTGAATCTGTCTGTGACTCGATCAGACACCCAATCAGCGAGCAGCCTGATGACTGAGGGGATTGTGGGTAGAGTGACATCACAAGAGGACCACCATTTGCCCGTGGAGAAAAGCGCTGCGTTTGCTCTCTGTCAGCTGGCTCAGTCCGGCGTCACACACCTGAACAGAAGCATCACTTACTCTCCATCCAGAGTCTGTCAGGAGCAAGAAACAAACCCTTCTTGGGTCCGGAGTCCAGCGCGTGACGCCAAATCAGGTGTAGACGCAGAAGACTCCGCCCCTTCCTCTGACGCTGCAGAGGTCTCCGCCCCCTCGTTACATGTTCTGCATAAAATACGGacaaagaaatacagaaaaagcagCCTGAAGAGAAAACAGACAGGCAGCCAAAGAAAATACAATCTGAGGAAGAGATTTAGtgtcagaaataaataaactcttttaTAGCTAATGAAGTTTAAACGTTTCAGGGAAACTCAGCTCTTATAAACTATCGTGTGAAGTATGGAATcatgtatttatacttttttttactgctacAATAATAATGTCCTTGCATTGTCTTCGTACTTTTCTGGTTGCAGGTTTTCATAcgtgcatgcaaataaaaaatggtcAAACTGG

Function


GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko05224 Breast cancer

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10421 lncRNA downstream 1291 27934981 ~ 27939452 (-) True G7105
TU10490 lncRNA downstream 92565 27847715 ~ 27848178 (-) True G7139
TU10424 lncRNA downstream 195448 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 196786 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 292457 27647927 ~ 27648286 (-) True G7014
TU10523 lncRNA upstream 14556 27956825 ~ 27957999 (-) True G7156
TU10453 lncRNA upstream 18305 27960574 ~ 28001479 (-) False G7125
TU10524 lncRNA upstream 19646 27961915 ~ 27964634 (-) True G7157
TU10548 lncRNA upstream 131648 28073917 ~ 28074306 (-) False LOC122349330
TU10557 lncRNA upstream 167413 28109682 ~ 28114927 (-) True G7182
XM_043245253.1 mRNA downstream 50167 27887819 ~ 27890576 (-) True LOC122349272
XM_043250498.1 mRNA downstream 137694 27794470 ~ 27803049 (-) True LOC122352815
XM_043250561.1 mRNA downstream 175737 27759218 ~ 27765006 (-) False LOC122352823
XM_043250806.1 mRNA upstream 33011 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 36409 27978678 ~ 27986215 (-) True LOC122352779
XM_043250640.1 mRNA upstream 54142 27996411 ~ 27997642 (-) True LOC122352890
XM_043245297.1 mRNA upstream 57085 27999354 ~ 28026817 (-) True LOC122349305
XM_043250448.1 mRNA upstream 85881 28028150 ~ 28034318 (-) True LOC122352793
TU10417 other downstream 1291 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 1291 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 685676 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 738176 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 1137818 26801910 ~ 26802925 (-) True c1h19orf53
TU10496 other upstream 132379 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 301859 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 448770 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 463913 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 581436 28523705 ~ 28525551 (-) True G7527

Expression Profile