RNA id: XM_043245320.1


Basic Information

Item Value
RNA id XM_043245320.1
length 1601
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122349325
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28050085 ~ 28052500 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGCTGCACTTATACATACCCTCCTGGATATAAGATCGAGAAAGCGTTCTGGTTCAAAAACCCTGTAAAGGATGTAGAGCCTCCAGATCTTTCTAAGGACCCTGAATACAGTCAGAGGTTTCAGTATCTGGGAGATAAACAGAAGAGCTGCACCATGAGACTgagtcatgtgacacagaaagaTGAACACAAGTACTATTTCAGATTCATCACTGATAAACCTGATGGAAAATGGACTGGTGAACCAGGAGTGACTCTTACTGTGACAGaTCTTCAGGTGGAGTCTcctgagagagtgacagagggAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCGCTCTGACTGACAGAGCAACATTCATCTGGTACAGAAACTCACAGCCATTAActgagagaagagacagaaacaatataCTCCTGCTGCAGTCAGTCAGAAGAGAGGATGCAGGCAGATATAGCTGTGATGTACAAGAACACAATCACTATCTCAGATCACCTGAGGTTTATCTCAATGTCACGTATCCATCTAAGAACGTCTCGATGTTCATAAATGGATCTGGTGAAGCTGTTTCTGTCACTGTTAAAGAACATCTGGTGATACTGTATATATCCATTGGAGCAGTTTGTGGAGCTGCAGTTATCATCATAACGGTGCTGATTTGgatcagaatgaaaaagagaaaaggcaCACTCAAAACCCagGATTCGTCAATGATGGATCCTTCTAGAAATGATTACAATAGTTATACAGCATCTGAAGTGGAGTCCTCTGAACCGGTGTATGCGAATGTAAcgaaTGCCCTTGATGCTTGTAATATTGAGATGAATGAACCTGCGTATGGGAATATAATGcgTGACAGACTGTAGTGTTTGGGAAACatggtaaaacattttatagctTTCTTTCATGTCTGTGGGTGGATCCCtgcttatattaaaataatagttcacccacaaagGAAAATTTACCCCATGATTAATTCACCCCCAAAccaggtgtatatgactttcagATGAAtataataagatttattttaaactatcctggctcttccaagcttcaCGATTGCAGTAATCAATAAAGTGGTGATCCGTATaaccttatttaaatatttaaaaacaagtggGACTCATTTTAGCCCAGGTGTTTCATCAGACAGGCAAGGCCTATTTTTGGGTGGCTTCTTGTCCAAgcatttgtatttcattaatgAGGTTCGTGTTTACGCTCATTTTCTTGTATATTTTCGTCCTCTCTATTTAACAGCTTTAACTTACAATGAAAGACGTCTTCCCTCAGGTACATTAAATGCTTTCCTGCCTATATTTACGTGTTAAGGTCAAGCCCCGCCGTAAAAATGATATGAACTGTCGTTATCaaatcaaaatgcatgtttatttgacttttttttacatcgATCTCACagtaatttgtacatatttaactCGCCGTAATTCATAACAACaccccttacagaaaacaagcaaaatcatGATTTATAGTCCATGAACACATGGGATGGCTTGGGGTTGAGTGGATCTCGGGCTGAGGGCGATCCCTTTAAATCATGTAGGTGTTGGTTTTATCCAGAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10488 lncRNA downstream 39838 27843678 ~ 28010247 (-) True G7138
TU10453 lncRNA downstream 48606 27960574 ~ 28001479 (-) False G7125
TU10461 lncRNA downstream 77875 27790801 ~ 27972210 (-) True G7128
TU10456 lncRNA downstream 78586 27924414 ~ 27971499 (-) True G7127
TU10524 lncRNA downstream 85451 27961915 ~ 27964634 (-) True G7157
TU10548 lncRNA upstream 21417 28073917 ~ 28074306 (-) False LOC122349330
TU10557 lncRNA upstream 57182 28109682 ~ 28114927 (-) True G7182
TU10636 lncRNA upstream 169756 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 186356 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 211897 28264397 ~ 28285334 (-) True G7480
XM_043245309.1 mRNA downstream 3174 28045169 ~ 28046911 (-) True LOC122349314
XM_043250829.1 mRNA downstream 4912 28043818 ~ 28045173 (-) True LOC122353000
XM_043250448.1 mRNA downstream 15767 28028150 ~ 28034318 (-) True LOC122352793
XM_043250458.1 mRNA downstream 15772 28028150 ~ 28034313 (-) False LOC122352793
XM_043245297.1 mRNA downstream 23268 27999354 ~ 28026817 (-) True LOC122349305
XM_043250471.1 mRNA upstream 4606 28057106 ~ 28062090 (-) True LOC122352802
XM_043245336.1 mRNA upstream 13547 28066047 ~ 28076645 (-) True LOC122349330
XM_043242481.1 mRNA upstream 134223 28186723 ~ 28187938 (-) True LOC122347290
XM_043242487.1 mRNA upstream 139206 28191706 ~ 28192763 (-) True LOC122347302
XM_043246520.1 mRNA upstream 165782 28218282 ~ 28220347 (-) True LOC122350202
TU10417 other downstream 110633 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 110633 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 795018 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 847518 27197905 ~ 27202567 (-) False LOC122344379
TU10046 other downstream 1247160 26802170 ~ 26802925 (-) False c1h19orf53
TU10496 other upstream 22148 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 191628 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 338539 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 353682 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 471205 28523705 ~ 28525551 (-) True G7527

Expression Profile