RNA id: XM_043245477.1



Basic Information


Item Value
RNA id XM_043245477.1
length 942
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122349409
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26980305 ~ 26983587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CATGTTTACTACAGCACTTGATGGTATACCAGAGCTCCAACATTCGGTCATTATTACAGCATTAAGAAGGACTTCTGGAATAGACTGGATATAATAGGATCTCCGTTCAAAATGAGGTTCTTCTGTGTTCTCTGGCTCTGGATGTTTCTGACAGAATTTCATTCGACTGCTGGTGAAATTTCTTGGCAAGGATCCAGTAAAGGGAACATCACGATTACATGTTCCTACAGCTGGGCTTCAACCAACATAAAGTATTTCTGCAGAGATCCGTGTAAAGACAGAGATATATTAGTGAAGTCTGCACAGACACCTAAAGGGAGATACACACTGAAGGATTACGGCGATGGAAACTTTGTCGTAAGCATCATTGATCTACAGGAGACAGACTCTGGCATCTACTGGTGTGGAGTGGAAAGATTGGGGCCAAATGCATTTAAGAAAGTCAAACTTATTGTATCTAAAGCCAACACTGGAAGCATGGAAGAAGTGACACGTCACAGGATGATGGAAACACAAACAAGCACCGAAGTGCACTCGACTAAACCAAGACACTCAGTTTTTATATCTTCAACCTCTAAAGACAGTGCACTCCCACTGACAGGTGCTGAACACAACAAATCATCTTCAGCTGCCAATATATTCCCAGTGcctttatattatattccatacgctgctgctggtctggtcATCGTGGTCATCATGTGTGCCGTTGGACTGATAACTGTTTGTCAGTGCAGAAAGAGAGTCAAGAAGACAAgACGAGTTATTGACACATCTATATACAATTCCCATCACATCGAAGAGAACACTCCTGATGACAGACCCTATGCCACCATAAAGAAATCCAGTACCATGTCGAATGACAAGAGCCAATCAGAACCAATCTACCAGAACCTACTGTTCAACACTACCCAGGGGGATCCTATATATGGAAATCTATAA

Function


GO: NA

KEGG:

id description
ko03060 Protein export
ko03070 Bacterial secretion system
ko02024 Quorum sensing

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10082 lncRNA downstream 38098 26933132 ~ 26942207 (-) True G6887
TU10072 lncRNA downstream 60271 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10071 lncRNA downstream 60307 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10026 lncRNA downstream 114568 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA downstream 114568 26863103 ~ 26865737 (-) True G6856
TU10127 lncRNA upstream 957 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 10851 26994438 ~ 26994699 (-) True G6923
TU10133 lncRNA upstream 23060 27006647 ~ 27007143 (-) True G6926
TU10134 lncRNA upstream 23916 27007503 ~ 27007987 (-) True G6927
TU10136 lncRNA upstream 25569 27009156 ~ 27009552 (-) True G6929
XM_043224501.1 mRNA downstream 60276 26917669 ~ 26920029 (-) True si:ch211-286b5.5
XM_043223173.1 mRNA downstream 62690 26912603 ~ 26917615 (-) True si:ch211-286b5.4
XM_043223267.1 mRNA downstream 62692 26912603 ~ 26917613 (-) False si:ch211-286b5.4
XM_043223346.1 mRNA downstream 62693 26912603 ~ 26917612 (-) False si:ch211-286b5.4
XM_043224264.1 mRNA downstream 68489 26911058 ~ 26911816 (-) True nanos3
XM_043245108.1 mRNA upstream 1772 26985359 ~ 26992582 (-) True LOC122349164
XM_043238097.1 mRNA upstream 30890 27014477 ~ 27024300 (-) True LOC122344082
XM_043238115.1 mRNA upstream 68140 27051727 ~ 27054595 (-) True dnajb1b
XM_043238130.1 mRNA upstream 82571 27066158 ~ 27067828 (-) True ndufb7
XM_043238100.1 mRNA upstream 85087 27068674 ~ 27076809 (-) True zgc:136908
TU10045 other downstream 177380 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 177380 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 562426 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 562426 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 844819 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 214318 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 257637 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 771195 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 771195 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1091061 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile