RNA id: XM_043245577.1


Basic Information

Item Value
RNA id XM_043245577.1
length 2476
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC122349510
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28604870 ~ 28616901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGTTTGGATAAGAAGAGAGAGCATAAAGACATTATGTCTGAAGCAAGTACTTCAAGTAATGAATCCATTCACAATTTGCCCCCTGGAATCAGTGAGGCCACAGCGACATCTTACCCCTGCAAGAGGAAGGGAGAAAGATCAAAATCTTCAGAACCCAGCAGTGTGTCTGTGAAGAGTGATAATTCCATGAAGATTTGGCCCGCTGCATTCAGTGATGAAccagtgacctctgaccctttAGGAGAAATACATGAGACATCCCACTTTCAGAACCATGTCAGGCAAGACAAAACTGAAGCAGTCCTAAAGACAAAAGCACTGGAGACTAGTAATATGCAGAGAGTGAAAAACcagcacaaaatcagcatgaaGAAAAAGTATGAGATATTATTTGAGGGACACAAACTCCAACAAAATCAAACTCTCTTGAACAAGATCTATGCACAGCTCTATATCATTGAAGGAGTGAGTGAAGGAGTGAATAAAGAACATGAGGttttacagatggagaaaacagCCAGAGCAAAACACTCAAAAGAGACTCCGATTGTCACGGTCGCGTTTACGCGGGACGAActgatgaagggCAATGTGATGTTCTATGAGGAGGACCTGATTGAGAGCGTTATAGACGTCATTGATGCCTCAGTGTTTTCTGGGATTTGTACTGAGATCTTTAAGGAGGAGTCTGTGATTAATCAGAGAAAGaggcTGTTCTATGATGAGTTCCCTCACTTATGCTGGATTGCCACTTTGACTGTAGTGACTCTGATGGTGTTAATCAGAATTATATACTCTCTGAGACCCTCTGATAAGTGCTATGCTAAAGCAGCAGTGGCATCGGATGCCGGGACTTGCTCTGAGATTGGGAGGGACATCTTGGGGCGTAAAGGTTCAGTAGTTGATGCTGCTATCGCTACTATGCTGTGTGTGAGCCTGGTTAATGCTCAAAGCATGGGCATCGGCGGAGGAGCAGTTTTCACTATATATAATGCATCAACAGGAAAGGTAGAGACAATTAATGCAAGAGAAACTGCTCCACTGAGTGCGTCACAGGACATGTTTGGAGAACATCCAGAGAATGCAAAAGCAGGATTATTTATAGGTACACCAGGACTGCTGCGTGGGATTGAGTTAGCACACAAAAGACATGGGAGACTGAAATGGAAGGAGCTGTTTGAGCCCAGTATAAAGCTGGCACGAAAGGGATTTCAGATTGGCAAGGCCTTATCCTTAGCCATTAATGAGACTAGTGGCACAATTCTGAATAATGCAGCATTGTGTCTTTTTTGTGGCTCGGACAACAAAAGAATCTTAAGGGAAAAGGATACAATAAGATTTCTCCAACTAGCTCACACTTATGAGAAGATAGCAGAAGAAGGACCAGATGCATTTTACGAAGGGTCACTGACTCAGGATATACTGAATGATATCAAGGCTGCAGGAGGGATAATAACGCGTGAGGACCTGATGAATTATAAGGCAGAGCTGAATGAGTATGCATTAAACTTCACTGTGGGGAATTACACATTTCATGTTCCTGATGCTCCATTCGGTGGACCTGTGCTCGCTCTGATACTCAACATACTCAAAGGTTACAACATCTCAAAAAGCAGTGTTTCCACAACAAAGAACAAGACTTTGACCTATCATCGCATGATAGAGGCTTTCCGCCCGCTGATGTCCAAAAGTAAACTAGGAGACCCACTGCATGAAGACCTCACTGAGATTGTCAAAGATATGACCTCTGAGAGCCTTGCAAACAAGATCAGGAGTAAGATCAAAGATGACATCAAACAAATCAGCTACTTTGAGCAGGAGGACAGCGATGGTGTACCCTTTGATCATGGCACGTCTCACCTGTCTGTCCTTGCTGAAGATGGGAGTGCAGTGGCCGTCACCAGCAGTATCAATAACTATTTTGGTTCTGGAGTGATGTCAGACTCAACAGGCATTATATTTAATGACCAAATGTGGGATTTCATTGATCCTGAGATGATAAGTGGACCTGGCCCAAACAACTTAATTAAACCagGTAAAAGGCCACTTTCGTCAATGTGTCCCACAATCATAGTGGACAAACACAACGGAAAGGTCAAAATGGCGGTCGGAGGAGCAGGTGGAACCAATATCACCACATCAGTTGCTCAGGTGATCCTGAACTATCTTTTCTTTGGCTATGACCTGCAGAAAGCTGTTGAAGAGCCCAGAGTTCAGATCACAATAAATGAGACAAATGTCGAAAAAGACTTTGATAAGAGTGTAATTGATGGGCTGAGGCTGAAGAATCATATTATATATCACAATACTGCATTATCAGTGGTCCAGGCAATTGGACGAGAGGGGGACAAAATCTGTGCTGAATCTGACCACAGGAATTACGGCTATCCCGCTGGATACTGATGCTGCTGTTGTCTAATGCAGCaaaagaaaaacctccaaaataGTGTTTCGGGTGTTTCATGGTGTTTCT

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247505.1 lncRNA downstream 115361 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 173242 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 187299 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 187334 28415443 ~ 28417536 (-) False LOC122326209
TU11095 lncRNA downstream 194562 28408242 ~ 28410308 (-) True G7516
TU11120 lncRNA upstream 54020 28670921 ~ 28672634 (-) True G7535
TU11130 lncRNA upstream 126543 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA upstream 126543 28743444 ~ 28784099 (-) False G7541
TU11133 lncRNA upstream 126543 28743444 ~ 28807706 (-) True G7541
TU11142 lncRNA upstream 156453 28773354 ~ 28774166 (-) True G7547
XM_043245565.1 mRNA downstream 1662 28598018 ~ 28603208 (-) True LOC122349500
XM_043255970.1 mRNA downstream 8749 28585817 ~ 28596121 (-) False LOC122356751
XM_043255835.1 mRNA downstream 8749 28585817 ~ 28596121 (-) True LOC122356751
XM_043256051.1 mRNA downstream 8749 28589938 ~ 28596121 (-) False LOC122356751
XM_043245543.1 mRNA downstream 98332 28496270 ~ 28506538 (-) True LOC122349482
XM_043256174.1 mRNA upstream 18023 28634924 ~ 28643497 (-) True LOC122356986
XM_043255722.1 mRNA upstream 28760 28645661 ~ 28652183 (-) True LOC122356692
XM_043255379.1 mRNA upstream 37108 28654009 ~ 28663246 (-) True LOC122356533
XM_043264597.1 mRNA upstream 57532 28674433 ~ 28676825 (-) True LOC122362864
XM_043254680.1 mRNA upstream 192311 28809212 ~ 28841535 (-) False LOC122355940
TU11106 other downstream 79319 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 158279 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 212817 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 356347 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 528426 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 432842 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 432842 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 489413 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 509870 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 509870 29126771 ~ 29128775 (-) False G7563

Expression Profile