RNA id: XM_043245788.1


Basic Information

Item Value
RNA id XM_043245788.1
length 8280
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC122349663
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30401205 ~ 30424282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTGGCCATCTGTTCGTGCCATCTtgggttctgcagcaggacaataatacaaaacacaccagcaagtcCACACCTGAATGGCTGAAGAAGaacaaaatgaagactttgAAGTGGCCTAGTCAGAGTCCTGACCTGAATCCTATTGTTACAGTTATGGATGGAGGAGGGATCCTTAGGCAGTCTACTGTCTGGGTGATAGTGCACGTTCAAGATGAGAATGACAATACGCCTGAATTCAAAGAGGCTGTTTACCGCATCAGCCTTCCAGAGCGGGACCGTAACAAACGCGGTGATCCTGTCTACAGAGTCTTTGCTTACGATCGAGATGAAGGGTCCAATGCAGATCTCACCTACAGCATCGTGGATGGAAATGACGACAGCAAATTCGTAATCGATGCCAAGACAGCTATGGTGTCTTCCAGGAAGATGGTCACAGCTGGTGGCTATGATATACTCACAATAAAAGCCGTTGATAATGGGAGCCCTCAGAAGTGGTCGACTGCCCGTTTGCACGTTGAATGGATTCGGAAGCCCGTGCCTTCGCCACTAGCCTTGCGATTTACCACAGCCATTTACAACTTCACAGTGGTGGAAAACGCCAAAGTGTATGAGTCAGTTGGAGTGGTCTCTGTTTGGCAGACAGAAACACCTTTATGGTTCGACATCATTGGTGGAAGAACGTCCCGGGAGATGTTTTATATCCCACAGAGTTCCTGTGGTGGAAACTGTTCATCTGACAGTGGTAACTATAATGGTCCATTTGATATTCAGAGAGGGATGGGGACTATAGTAATAGCCAGACCTCTAGATGCAGAGACACAGTCGCTTTACAACATGACGGTACAGGTGACTGATGGGACAAGCACTACTACCACACAGATTTATATAAAGGTTTTGGACAGCAATGACAACAGTCCTATTTTTTCTGAGCGTACATACGAAGTCTTGGTGTCTGAAGATACACCAGCCGACACTGAGGTCTTGCGTGTCCGGGCCAGGGACAAAGATGAACGGGCGAAGTTGAGCTATTCTATCCATGGCAGCGTTGATCCAGCTAGCATGCGGATGTTTAGGATCAATCCTGGTACTGGTGTCATGTACACAGCAGATCGACTGGATTATGAGATCCGCACTCAGCACATCCTTACTATTATGgtGAAAGATCAAGAATTTCCTTATTATAGAGACCTAGCACGGATTATTGTGACCTTGGAGGATGCCAATGACCAGCCTCCCTTTTTTACTCACACTATTTATGATAGTACAGTGTTTGAGTCTGCCCCACCAGGAACATCAGCTCTGCAGGTGATCGCACTAGACAGAGACTCGGGGAGAAACGGCGAGATAGTTTACTCAATTGATGCAGGTAAACACTTTgtatgtgatgtttttttttttNCAGTAGCCAGAGAGCTCGACCTTACCACTGTGGGTTTTTATACCCTTACTGTAAGAGCCACAGATGGAGGTACTCCGGCGTTAAGTAGCACAACTACTGCTAGGATCGCCGTCTCTCTGTCAGATTTCTCCAGTCCAAAGTTTGCCCAACAAGAATACCAGGCTGAGATCACTGAGAATGTGGCTATTGGGAATTTTGTCATATTGGTCTGTGCAATTAGCCGAACCACACTGATTTATGACATTATACAAGGAAATGATGAAAGGAGGTTTAAAATAAACCGTTATACGGGTGTCATCACGACACAAAGGAATTTTGACTTTGAGATGACCTCTTCATATATGCTGGTGATCCAGGCTGTAAACATGGCTGGGATTGCCTCCAGTGTCACAGTATGCATCCAAGTGGTTGATGAAAATGATaatcctccagtttttcaggAGCTCACATATACAGGGACCATCAGTGAGGCAGCCCCCATCAACAGTGTGGTGATAAGTGAGGATGGAAAACCCCTGGTAATTGAAGCCACAGATGCTGACAAGAATCACAATGCCCTCCTGGTCTTCCAGATTGTGGAGGACACAGCAAAATTGTTCTTTACTGTGGACTCAGGAACAGGCTCTGTCAGAACTATAGCTAAACTGGACTATGAAACAttcagtgctttttatttttctgttaatgtgAGGGACAGTGGCAGGCCTCAGCTGACAGCAGAGAAGCCAGCCAAGGTCCTAATCAGGGTTGTGAACATCAATGACTCTCCCCCTCAGTTCTCACAAGAAGCTTATGACACTGTTTTGCTTCTTCCAACATATGTTGGGGTTGAGGTTCTGAGAGTAGAAGCCACTGATCCGGACATGACCACTGATCTGATGTATTCCTTAGCTGATAGCAACTTGGAGCACTTCGAAATGGATTCATCATCGGGCATACTCACggtcaaaaacaataaactctCCAAAGACCGCTATCGTTTTAATGTCAAAGTGTCAGACGGGCGGTACTTTTGCACAGCACTTGTGACTGTGTTAGTTAGGGAGGCTATGGACAGTGGCCTCCTCTTCAGTCAAACCACATATTCCTCATCTGTACTGGAGAACAGCGTGAACATTACCACTGTGAGCATTGTAAATGCTGTAGGAAACCGTTTAAACGAACCACTAAAGTACACGCTTTTGAATGCAGGCACACGCTTTACAATTCGTCCCACATCAGGAGTCATTCAAACCACAGGAGTCCCTTTCGATCGAGAACAACAGGAACTGTATGAGCTGGTGGTTGAGGCAAATAGAGAATACGACCAGCTGCGAGTTGCTAGAGTAACCATTAGAATAGAAGTTGAGGATGTTAACGACAATGCCCCAGAGTTTCTAGGCCTTCCATATTATGCGGCTGTGCAGGTAGATGCAGAACCTGGCTCATCCATCTTCCAGGTGTCTGCGACAGATTTGGACAAAGGGATAAATGGAGCTGTATATTATGAGCTTAAGGAGAATCATCCGCATTTTGAAGTGAATAAGCTTACTGGGGAGCTTAATCTTAAAAAGGCCTTTGATGCAGACTTGTCCAATGTTGAATATCCGCTGGTGGTCATTGCACGTGATGCTGGCTACCCCTCCCTCTCCACTGTTGTCAAGCTTCCAGTTACAGTTGTGAACAAGGCCATGCCTGTTTTTGACAAGTCATTTTATGGCATATCAGTTAGAGAGGATATTGCAGTGTCAACTCCCATATTATGCATAAATGCCACCAGCCCAGAGGGCCAAAACATTATATACACTATTGTGGAAGGGGATCCTTTCTTCCAATTTGATATTGGCTTTGAGAGTGGTGTGATTAGTGTCATATATCCTTTAGACTATGAAACTACACCCAACTACAGGCTAACCATCAGGTCTACAGACACTCTCACTGGAGCCAGATCCGAAGTAGATGTGGACATAGTTGTGGTAGATGTAAATGACAATGCCCCTGCATTTCGTAATGCATCATACACCAccactttaaaagaaaactcaATGATTGGGTCTAGCGTGTTACAGCTTTGGGCGACAGACAaggattctgaaaaaaatagtataattaGTTATCAAATCCTCTCTGATGGGTTTAATAGCACAGATTACTTTCACATTGACACTACTAGTGGACTCGTGTTAACAGCCCGTCTTCTGGACTATGAACTTACACCGAGCTTTAGCTTTATCGTTAGGGCAACAGACAATGGTTCCCCATCCCAGAGCAGTGAGGTCACGGTCACAGTCTTAGTGAGTGACGTGAATGACAACCCACCATCCTTCAGCCAGCCACTTTATGAAGCTTTTGTGAGTGAACTGGCTCCCCGAGGGCACATTGTGACATGTGTCCAAGCTTCTGATGCAGACAGATCAGATGCAGAGAGTTTGAGGTACAGCATACTCTCTGGAGATGAGAAAATGAACTTTATAATAGACTCTCAGACAGGTGTCATTTCCTTGTCCAGCCAGCGTAGGCAGGGCATACGGCCAGCATACAGCCTCAATGTGTCTGTATCAGATGGGGTCTTCACCAACACTGCACAGATAAACATTCGAGTCATGGGTGCCAACCTTTACAGCCCTGTCTTTAGTCAAAGGTTCTACTTGGCTGAGGTCCGGGAAAATGCACCAGCCGGTACCAAAGTCATTCAAGTGCGTGCCACAGATGAGGACTCTGGGATTTTTGGTCAGATCATGTATTCCTTTATCAATGACCTTGGAAAGGCACAGTTTTACATTGGAGCTGATGGCCTAATAACTACAGCTCAGAAACTCGACAGAGAGAACCCAATAAACAGAGACATTGTGCTAACTGTTATGGCACTTGATGGTGGGGGAAGAGCTTCCTTCTGCACTGTTAGGGTAATTCTTGCTGACGAAAATGACAACGCGCCACGTTTTAGGGCTATGGAATATAGAGTTAGCATAAAAGCTAACGTGCCAATGGGATCACTGGTGACTCAAATCCAAGCTCAGGACCCAGATTCCGGCGATAATGGTAGAGTTAGCTACTCACTGTACAGTGAGGCAAGGCTTCCTCTTGTGGATGTGTTGGAAATTGAACCTGACAGTGGTTGGATGGTCACAAAGGGGAGCATGGCACATCTAAGAGGAACGGTTCTCTCCTTTTTTGTCAAAGCTACTGACGGAGGTGTTCCAGCCAAACATTCCCTTGTGTCTGCATTTATTCATGTCTTACCACCTGATGCAAATGTACCCTCCTTCACCCAACCCCAGTATTCCTACACGGTCCCAGAGGACACATCTGTTGGGACAGTATTGGGATCAGTGTACCTAAGTCCTGGTCAAACAGCTTTCTTTTCTGTGGTGAATGGAGAGACTGGGGAGAGTAACCAGGGTGGGACATTTTTGATTGAGAGAGAAACTGGACTTCTAAGACTTGTTAACCCTCTTGATTATGAACTCATTAACATTTATCGTTTCAAAGTTGCAGCCACCATGAGACAGGCACTAGTTGAATCCATGTCTGTAGTGGATGTAGAAGTCAAGGTGCTGGATGTTAATGACAACAAACCATTATTCGAAACCAGCTCTTATGTTGCCATGGTTATGGAGGGCATGCCTAGGGGTACACGGGTCATCCAGGTACGAGCACTTGACCCTGATTGGGGCTCTAATGGACAGGTTAATTATAGCCTTGGAACAACTTTAAACCAAGAGCAAGACAAAGCTAGTGGCTCTAAATCTGCTGCTGGTGCCATGTTTGTTATTGACAGCAAGACTGGTTGGATCACTACTCTCGGTGACCTGGATCATGAGATGTGTCCATCTTACACCTTCAATGTGGTGGCGTCTGATCTGGGTGAGGGTGTCTCGCTTTCTTCCACAGCAGTAGTGACCATTGCAATCGCAGACGTTAATGACAACCCCCCTACCTTCGAGAGAGCATATTACAGAGGTGCTGTACGAGAGAGTGACCCCCTGGGAGAAGTGGTTTCAGTGCTGAGCACTCGTGATGGGGACAGCTCTGATCAGAATCGGCTTGTCAGCTTCCATATCACAGGAGGAAACCCCAAGGGGGTATTTGCGCTGGCTCCTGTTCAGGGGGAGTGGAAGGTCTTCGTGAAGCGGCCTTTGGACAGAGAGGAGCAGGATCGATACCTGCTCAATATCACAGCCAGCGACGGCCTGTTTGTAACCCGCATAGGCGTGGAGGTCACTGTCATGGATGCCAATGACAACAGCCCCATCTGCAATCAGGCACAATATGAGGCCTCGTTTCCAGAAGATGTGCCTATTAATACTGCTATTCTGACAGTTGGAGCAACAGACTTGGACAGTGGCGTCAACGCAGAAATTCAGTATTCTCTGTTTGGCATTGGCGTTGAAGATTTTTACATGGATGCAAATACTGGTGAACTGAAAACGGCCTCTTTATTGGACCGTGAGAGAACTGCAGGTTATAAGTTGATAGCACAGGCTACAGATGGAGGAGGGCTGTTCTGTCGCTCTGAAATTTCTCTGACCATTCTGGATGTTAATGATAATATACCATCATTTGCCTTCACACGGTTCATGGCGAGTGTATATGAGAGCGCGGCACCCAAGGCCTTGCTCACACGCCTTCGTGCTAATGATCCAGATGAagGGCTAAACAGGAAGATCGTGTACTCGCTTGTTGACTCCGCTGGTGGCATGTTCTCGGCTGACCCATCGTCTGGTGTGGTGATCCTGGAGAAGCCTTTGGACAGAGAGGTGCAAGATTCGTATCAGATCAGAATCAAGGCTACTGACCGATCAGGGGGCGATGGCTCGCTCTCCACAGAGGTGGACCTCACCATCATGGTTCTGGACGTGAACGACAATCCACCTGTGTTTCAAAAGCAAGATTACATGGTCACAGTGCCTGAAGATGTTACTATTGGAACAGAAGTTCTGCGAGTCTTTGCCATGAGTATTGACATTGGAGTGAATGCAGAAATCTACTATAGATTCTTGTCTGGAAATGAGCTGGGGAAGTTTTCCATTGATGGTTCAACAGGCATAATTTCTGTGGCGGATGATCTTGACTATGAGCTCTGCAAGGATTTTTTCCTAAATGTGGAGGCCTTTGATGGTGGAACGCCTCCCTTGAGAGCCGCCACAATAGTGACCATAGAGCTTCTGGATGTCAATGACAACTCGCCTTCATTCAGTGAGGACATCTACAATGTTCTGATCAGCGAGGACGTAGCTATCGGGGAGACGGTCACGAGGCTGTTTGCAGAAGACCTGGACAGTCAAATCAATGGGCGAATCACTTATTCCATTCTGAAAGGGGACCGGGAAAATCAGTTTTGGATCGACCCTGTCACCGGGCTTCTGAAAGTTAACAAGGCACTGGACAGAGAGACGGTCTCCAGCTACTCATTGTCTGTGCAAGCGTTTGACAGCGGGTCACCTGCCAAGTCAACCACTGTGAATGTCAATATCGAGATTGCCGATGTGAATGACAACCCGCCAATCTTCTCTCCTGCGAATGCTTCAGCTGTTATTCAGtttttttttttttttctctcgctgaaCAAGCCTGCAGGAACTACCATCCTGTCACTATCAGTTTCTGATAAGGACTCCTCTAGAAATGGTGCACCTTTTGAGTTTCGCATTGTGTCTGGAAATGAGGGCAATGCTTTCAGTCTGGACCAGAATGGAGAATTACGAACGAGCCGAGTATTTGGTCCTGATGCAACACGAGAGTATATGCTTGAGATACAGGCGCGTGACTCAGGGAAGCCTCGTCTGTCCTCCACATCctttgtgtttgtgcgtgtcaTCGGAGACAGCCTCTTCAAACCTGTGGCCTTCCCACTGGAAATCAACATTGTCATGGCAGCAGATGTGTTTCCTGGCGGGATTATAGGCAAGATCTATGCCACAGACCGAGACGAGAATGATGTTCTGTCTTTCAGTCAGAAATCACAAACAAATAGTCTTTTCAAAATCAACAGACAGGACGGGAAGATTGTGGCACTAAACGGTCTGGAGCCTGGaagATACACCCTAAATGCCACGGTGAGTGACGGGCGGTTCTCTGTGACCGTGGGTGTTAGCGTCCAGGTGGAGCAAGCCACGGATGAGATGGTGCAGAATGCAGTGACTCTGCGTTTCCAAGACCTGTCTCCTGAGGATTTTGTGGGTGTGTACATGGAAGAGCTGAAGAAGGTGCTCCGTACCTCACTGGTTAGTGACGGGACGGGTGCCGTTGAGGGACCAGACCCTCTTCACATCCTGGGAGTGCAGCCACTGAGTCGCTCCAGTCAGCTGGAGGTGCTCCTTGCCGTGGAGACACCAGATGGGGGTTATACGGGTCCAGGAGAGCTGGCTCTCAAGCTGGAGGAGGTGAAGGGTTTTCTAAAGGGAGCGCTGAGGGTGGTCAGCGTCCTGGATCAGAGCTGCTCAGGAGAGCTCGAGTGCGGGGAGAGAGTCTGCGAGCTCACCCTCAGTCTCGACCCCATCGGTTTGGTCACCTACACCACCTCCAGAATGAGCTTTGTTTCTCCACGCTTCAGCAGGAAAGAGATGTGCACGTGTCCAGGAGGAATATGTCCATCTTCTCTGGAGCTCTGTGATGGCCAAACGTGTCCGTCTGACATGCAGTGTGTGCGCAGCGGCCCCGCAGCGCCATCTCTCTGCCAGTGTCTGCCTGATACACTGGACAAGTGCGCAGGACAAACATCTCTGAGCTTTGCAGGGAACAGTTACATCAAATACAGAGTGACGGACGGTGATAGGAGCAGAGACATGAAGCTGGGCTTGAGAATCAGAACGCTCCACGGCCAAGGAGTCATCATGTATACACGCGCTGACCCCTGCACACTGCTCAAGGTCAGAAGGACACACATTATTGCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11674 lncRNA downstream 110168 30290710 ~ 30291037 (-) True G7824
TU11672 lncRNA downstream 116855 30283969 ~ 30284350 (-) True G7822
TU11667 lncRNA downstream 157881 30195990 ~ 30243324 (-) True G7817
TU11654 lncRNA downstream 216596 30176165 ~ 30184609 (-) False G7806
TU11663 lncRNA downstream 223257 30169979 ~ 30177948 (-) True G7813
TU11724 lncRNA upstream 39041 30463323 ~ 30523613 (-) True G7864
TU11725 lncRNA upstream 39041 30463323 ~ 30504689 (-) False G7864
TU11727 lncRNA upstream 134968 30559250 ~ 30559552 (-) True G7866
TU11736 lncRNA upstream 232174 30656456 ~ 30661467 (-) True G7874
TU11932 lncRNA upstream 418696 30842978 ~ 30843402 (-) True G7988
XM_043245781.1 mRNA downstream 574 30393908 ~ 30400631 (-) True LOC122349654
XM_043247390.1 mRNA downstream 76340 30323319 ~ 30324865 (-) True LOC122350704
XM_043246511.1 mRNA downstream 79222 30319081 ~ 30321983 (-) True LOC122350179
XM_043247807.1 mRNA downstream 87154 30307963 ~ 30314051 (-) True LOC122350995
XM_043249238.1 mRNA downstream 239292 30155709 ~ 30161913 (-) False LOC122351861
XM_043239911.1 mRNA upstream 429754 30854036 ~ 30861383 (-) False gyg2
XM_043239904.1 mRNA upstream 429754 30854036 ~ 30861381 (-) True gyg2
XM_043239920.1 mRNA upstream 429754 30854036 ~ 30861378 (-) False gyg2
XM_043235414.1 mRNA upstream 438097 30862379 ~ 30873365 (-) False cd99
XM_043235405.1 mRNA upstream 438097 30862379 ~ 30873101 (-) False cd99
unassigned_transcript_183 other downstream 14339 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 15764 30385369 ~ 30385441 (-) True trnap-ugg_1
unassigned_transcript_181 other downstream 16404 30384731 ~ 30384801 (-) True trnae-uuc
unassigned_transcript_180 other downstream 20012 30381121 ~ 30381193 (-) True trnar-ucg_114
unassigned_transcript_179 other downstream 21442 30379691 ~ 30379763 (-) True trnar-ucg_113
TU11729 other upstream 205952 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_184 other upstream 438588 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11966 other upstream 521807 30946089 ~ 30957486 (-) False G8009
TU12079 other upstream 1107787 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 1125904 31550186 ~ 31554035 (-) True G8089

Expression Profile