RNA id: XM_043245884.1


Basic Information

Item Value
RNA id XM_043245884.1
length 6967
RNA type mRNA
GC content 0.47
exon number 39
gene id pcm1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9866164 ~ 9888659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGTTTGGATATGGGCTAAAGATGGCCGCGACTGGAGAGGCGGTTACTCCGAGTGGAAGGCACACTACGCATTGACACTTTATCTGGGATTTTAGTAAACTACATACGATAATTATTTCCATGTTCCAGTAATAGGTTGCCTCAGCGTTCAAGGTTCTGATCGTTCATGATGGCGACAGGCGGCACACCATTTGAAGACGGCACAGATGAGCAGGAGTTGCACAACTGGAGCATCTCCAACGGAAGCTTAGATGACAGACTCAACAATATGGATTGGGGAGTTCAGCAGAAGAAGGCCAACCGCTCCTCTGAGAAGAACAGGAAGAAGTTCTCTGCTATGTCAGAGAGCCGGCTAACCAATGACATTTCCCCGGAGTCCACTCCCGGAGCGGGACGACGGAGGGCACGCACACCCCATTCTTTCCCCCATGTGAAGTACAGCACTCAGATGTCTGTGCCTGACCAGGCTGAGCTCGACAGGCTTCGGCAGGTCATAAACTTCACAGATCTGGATGAGAGAAGTATTGGCAGTGACTCTCAAGGCCGTGTCACTGCAGCCAACAATCAGAGACAGCTGTCAGCTGAGGCCAAGAAACCTTTCAACTTCCTGCCAATTCACCTCAACACTAACAAAAGCAAAGAGCCCACTGCATCCACCTCTTCTACACCTGGGGGCAAGGAACCCAAGAAACAGAGTCCTGGGAAAGAGCTGTTTGCCCCAGTTCCATCAGTGGTTAAAGAGCCTTTTAGTCTGGACAGTGCTCAGCGGTTTGGATTGGAGGATGAAAAAGCAGAGCTTAGTATCGACAGCAGTCAGGTGGTCAGCAAACTGGTGCAAATTCGTGAATATATTGGAAAGGCCACATCCATGAGAGACGACCTGGTGGAAAAGAATGATGTGCCTGCAAATGTGGAACGTCTCTCTCTCCTTATCACTCACCTGAAAGAACAGGAGAAGTCTTACCTGCGTTTTCTTCAGAAGATGCTGGCGAGGGAaaatgaggatgaggatgatgatgaaggtgCCACGGTGGACTCTGCAGTGGGTTCAGGCTCAGTGGCCGAGAGCACGTCTCTGAACCTGGAGCCGCGCTCTGAAGCCTCCAGTGCCACTGGCCACGGTGTGTGTGGAGAACAGAAAGAAGAGCTAGAGAACATGAGAAAGCAGCATGATCTACTAAAAAAGATGCTAGAACAGCAGGAACAACTCAGAGCACTACAAGGCCGTCAGGCGGCACTACTGGCCATGCAGCAAAGTGCTGAACAAGCCATAGCAGTTATGGATGACACTGTTGTTACAGAGACTACTGGAAGTGTATCTGGAAGGAGCATTACCTCAGAGCTCAATGATGAACTCAACGATCTTATCCAGCGCTTTCATAACCAACTGCATGATTCTCAGtctcAGACGGTGCCTGACAACCGACGACAGGCAGaatgtctctctctttcaagAGAGGTGTGTCGATCACGCACTACCCATAATCCCAGGAGTCACTTGCCCTCCTCTGCCCCACTAACTACTGCATCAACATTTGCCAGCATTAAACTCACCAAACTGCAGGTTCTACAGGACAAAAAGCAAACCATGGACAAGATCCTTCAGGAGCTCCATTCCCTTAGAGACCAGACCCTAAACAACAGTTCATGTCAGAGTGTGAGTCAGCGTGGTACACGCATGGGCATGTCAGAGCGCCCCTCTGTATTGGGTAGAGAAGGAAATGGACCACGTCCAGTAAGGCAGGACTCTTCCTCCTCTTACACGCATATAGATGATAACCATCCTGCTGATAAACTCAGGAAACTTAAGGAGGTTCACAAGCGTTTGAATGAACTAAGAGAACTTGTTCAGTATTATGAACAGACATCAGATATGGTGGTGGACACAGTAAATGAGAATGTGAAGGAGGACGATGACGAAACGGAGGATGGTTCACTTTTTGAGGCCATGTTTGATTCAGAGCAGGAAAACCATGAACCGGTCACTAACATCAGaaATCCAGCCCAACCACAGACTCCGAGTAACTGGATGGACATGAACAGTTTGGGGAAAGCTCACAGTGCCTCCAATAATAGAGATGGCCGTCTGAACACAGAATGTGAAATTAATAACCGCTCCGCAGCCAACCTCCACAGTCTCAACGTCCCTTCAGTCATAGAATGCCAGTTCAATCGGGACAGGCCTTATGATGGTGTTAAAGATGAAGATGACGATGAGGTACTGGAGGAGGATGATGGGGCAAGAGGAGGCAGAGGCAGAGACAGTGACGGTTCGGGCTCTAGTCGTAGAAGCAGTCTAGGTGGTGACACAGATTATGCTCAGAAAGTTCGTCGTCTTCAAACAGCCAAACAGAAACTCAGACAGCTCCAAGAACTGGTGGCCATGGTGCAGAGTGATGATACAGATGGTACTACAGCTAATGAGGATGAGGGTTTAAAGCAACAACCCAATAACACCAGAGCAACAGCTCCCAATGTCCAGAGAGACATCACCCTCTCTGAAAGGGCCAGAGAGAAATTGTATGAGGAGAAACTCAAGCAGCAGCAGCTGGAACTAAAGCAGCTAcatgaagagagacagagactgatGGAGATCCAGGGCAAAATACAGGATTTACAGTGGGCTTGTCCTGACCTGCAGTCATCTGTGAGCAGTAGTGTCAGTGGTCAGATGAGGAAGATTCCTGCAGCAGCCTCTACTCCTGCTCCTTTACCATTACACTCCTCTTCCACCGCTAAAGCCAACACAAGTGGCCTCAAACCCACCACTGAACCTCCTCCAGTTACTGTCACTGACAATGAGctaTGGTCGGAGATGCGAAGGCATCAGATGTTGCGTGAGGAGTTGAGACAGAGGCGGAAGCATTTGGAGAGTCTGATGGCAGAACAGCAGAGGAGAAGCACACTCATTGATTCTCCATTTAGGAGTGAGACACATGAGACCCAGTCCTACAGCCGTGATGAAAGAACCGTGGCCACCTGGGGTGGTTCGACACAGTGTCCCCTTGGTGATGATGACGATTACTCCTCTGAGGTGGGGGCTGAGGAAGAGGACGATGATGAACATGATGAGGGAGAGGAGTCCAGTTCCACCGATGAGCTGCATGCTTGCTCCACTCAAAAACAACGCAACTACAGCAGGAATAACAGAGATGGTCTGAAAGTTCACAGGGAAATTAATGGGAGTCCTTCCCCCCGTGGATCAAGGGGTCGTCCTCGTCAGCCCCTGCAGACTGAAAGAGGTAGTTCCAGTAGAGCCAAGCGGCAGGAGAACCTGAGATGGGCAGCtgatctgtctctctctgaggGCTCTGCACCAGCACACTGGCAGGAACAGATCACACACCTCCAGAAACAGCTCAACTTCAGCACTACCATGTGCCAAACCTTGCTACAGGATCAACAGACACTTTCATACATGCTGCAGGCTGTACTCACAGGCCCCTATGGTGTTGTGTCCAATACTGTGACCTCTCCTCAAATTCCTCTTATCATGCACCAACTAAACCAGTGTTACACACAGCTGGCTTGGCAGCAGAACAATGTTAACCGGTTGAAACAAGTTCTGAATGATCTTTTACGGCAACAGCAGAGTCAGTCATTATCAGGACAACAGCAGCATCAAAATGTTGGGCATGATTCTGCATCATCTTCTTTGTTTGTAAACTATCCTCCTGTCAGTACGCTCAATATGCCTGGACTCCCAAACTTCTCCACTTTGCCAACTGGCTTTAATTTCAGTCCCGTATTTCCCCCCTCAGTAGGAGATTTTCAGCAGAACCAGGCCAGTTCAGATCAACAGCATGATCCAAACATATCCCTCAAAACGGAATACATGAGTTTCCCCCCTCCACTACAGAGATCCCCATTGAATAATGCAGAGAAACGGTTTCAGTCTCAACCTGACAATGTGCCTGATGCTAAAAACTCAAGCTGGTTAAACTCCTCTCTGAATCGCTCGGGTCAGAGAGCCACCCTCACCTCTGACCATCAAAGTCAAATAGAGCAGAACACGCCTTCCTCTTCTCCTGTCCCTCACCCGTCCACCTCCCGGGACCTTTCTTATATACCTGACTCCCAGGAGTCTATAAGTAGCCTTCCAGATAGGGCAGATCCAACCACTGTTACCAAGACTTTCAGAGCAGGACGTAAGGCTGCAGCACAGGCCAGCCTGGCTTCGAGAGACAAGACCCCCAACACAAAGAGCCGCCGCAGGAGAGGCAGGGGAGTGAAGAACACAgCATCTGTGGACAGTGACAGTGCTTCGAGTGACTCTCACTTTGATCAGGACAGAGAGCGCACCTCTCAGGTCAGATACAAAGATCTCAACCAGGGTTTGCTAGACAAACTCACACAGGAGAAATTGGACAGCAAGACCAAGAACAGCAAGCCAAATGACCTTTCATCTGATGTGAGCagtgatttctctctgtttGAGGCCCTGAGAGAAACAATCTATTCTGAGGTAGCAACGCTAATTTCTCAAAATGAATCTCGCCCTCACTTCCTCATCGAACTTTTCCATGAGCTTCAGCTGCTCAATACAGACTACCTTCGCCAAAGGGCCCTCTATTCGCTACAGGACATTGTAACGAGGCACCTGACTGAGAAGAGTGTAGCAGATGAGCAGGCATCTTCTTTGGGTCCAACTGTATGGGCTACAGGCTCCCAGTCAGAGCTCACACCTAGTGAGAGTTTGGCTACCAGCGACAATGATACATCTGAGAAGATTGTAACGGTTAAATCCAACTCTGTACTGAAAAGGGTAACAGATGGAGACTCCATGGACAACGAGAGCTTGCTGTCCACTTCTTCCAACCTTGAACCTTTTGCTAGTGATGACCTGGGTAACACAGTAATTCATTTAGATAAGGCATTGGCCAGGATGAGGGAGTATGAGCGCATGAAGCTGAGGGCTGAGTGTAACACAGATAACCCTGatggtgctgctgctgctgccccTTATACTCAAGGTGCAGGACATTCATCTACAGATGCCCATTGTCCTCAGATTGACACACAACAGCTTGACAGACAGATCAAAGCCATCATGACAGAAGTTATTCCTTTCTTAAAGGAGCATGTTGGGGAGGTGTGTTCACATCAGCTGCTCACATCTGTGAGACGTATGGTGCTCAAACTCACTCAGCAAAATGACGAAAGCAAAGAGTTTGTTCGGTTCTTCCACAGACAGCTGGGCGGAATCTTGCAGGACTCTTTGAGTAAGTTTGTTGGGCGGTCACTGCAAGACTGTGGTGAGGACCTGCTGGTAGAGATCTCTGAGATCCTCTTTAATGAGCTTGCCTTCTTCAGACTGATGCAGGATTTAGATCAGAACAcctccaaaaacaaacacagaaccaAGAGGCGCTCTGACCACACATCTCCAAAACGTTCACCTCACACCGAGgaggcAAAAAATCTTGAAAGAGAAAAGACATTCTCTCCATCATATTTTGATGAAGACAGAGATCAGGATGAGACTGAGCAGGGTGGGATGCTTCATGAGATGGAAGAAGATAAGGAGCAAGATGCACAGAGCAGTGAAGCATCTGAGGTGGAAGAAGAGAAGGGAGAAGGGCTGCCTCTTTCTATAAgCCTGTCTAAAGCAGAGACACAGGCTCTATGCAACTACGGCAGCGGAGAAGATGAAAATGAAGTGGAGGAAATAGAGGAGTTTGAGGCTGGACCTGTTGAGGTGCAGACATCATTACAAGCCAGCATGGACAACACTAGTGAACACAGCCAGGGCTCTGCCTTACGAAACGAAGCCCCCCAGGAAACCAAATCAGACTTGGAAAACTCAGAATACAGCCAATtgcaaaacattaaattgGAGTCCAAAGACATGGTTCACCCTCCACAGGAAGACACAGAGGAGGTAAAAACTGCTTCAGGAGATGAGAAAGGGGAAGAGGAGGACTGTGCTGTTTCTCCAGCCCAAGAAACTCCACAGAGCTCAGATACAACCAGTCCTGACACAGAGTCTCCAGTCATGATCAACACTGACGAGGCTGGATCTGGAAATACCAGTCAGAGATCAGATGAGGAAGATTTTGTGAAGGTTGAGGATCTTCCTCTTCAAATGTCTGTTCTTTGTGAGGAAGAGCTTTGTAAGAGGATCTCAGAAGAGCAgcagaataataatttaacagctGAAATTCTGAATGGAAATAAACACGAGATTACAGGATTGGTGGGAAATGCTCAAGCACTCAAAGAGCCTGaaacCATTGGAGCTCAGAGTGCATGAGAACGGTCTTGTGATCCGTCTTACACTGCAAATCATCATTCATGCAACATTACTGTATAATAAGCTTAATACCTTAAGATTCCTTGGAAACAACAGCTAAGCTAAGTCTCAGTGAATTAGCCTGTCAGCATGTGTGATCTAACAGTTCGAGACGTTAAGGAAGTCTCTCTAAACTTGTAATAGTTTTCTTGGATTGTTTTATGAATGTAGGAGAGTTGTTTTGAAGGGGCTCTGCTCTGTCTTTAAGCCTGCGAGTactttttctgtgtttctctttgTTCAGTCAGAACTCTTCAAAGGCTTCAGTTTAAGGGATGCAGATAATTTGCATTCCCATGTTTGGCATGGtttggcttttgttttttgcatttctttataGGATTCCTTCCCAGACCGCTGTGATTATTTGCCAATGCAATACATAAAGGAggatagatgttttttttgtctgattcaGGACAAAACTTAAGCACATTTCAATTCATCAACTCAGAATACATAATGAAATGTGTAATGGTTAGAGCAGAATCGCATATTTAGCACTGGTACTGGTCCTGTCTTTTCTTATGGcactcttttaaatgttttctcctgcttttatttttttttttttttaaggcacgTTGGCCAATGCTTGGGTTCTCACCCCATTTCACCTCATGTAATTCTCCAatgtttagattaaaataaataaaacattgatttttacCA

Function

GO:

id name namespace
GO:0005813 centrosome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3114 lncRNA upstream 79003 9784218 ~ 9787161 (+) True G2149
XR_006252042.1 lncRNA upstream 803555 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 812691 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 834341 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1123643 8740832 ~ 8742521 (+) True G1979
TU3213 lncRNA downstream 190226 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 484303 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 939026 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 946372 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 948966 10837625 ~ 10838465 (+) True G2352
XM_043236706.1 mRNA upstream 2478 9827103 ~ 9863686 (+) True mtus1b
XM_043241164.1 mRNA upstream 60681 9799826 ~ 9805483 (+) True vps37a
XM_043248761.1 mRNA upstream 71968 9771043 ~ 9794196 (+) False micu3a
XM_043248725.1 mRNA upstream 71968 9771044 ~ 9794196 (+) False micu3a
XM_043248742.1 mRNA upstream 73091 9771042 ~ 9793073 (+) False micu3a
XM_043242903.1 mRNA downstream 368003 10256662 ~ 10335202 (+) True fat1a
XM_043242917.1 mRNA downstream 368003 10256662 ~ 10335202 (+) False fat1a
XM_043242924.1 mRNA downstream 368003 10256662 ~ 10335202 (+) False fat1a
XM_043242940.1 mRNA downstream 368003 10256662 ~ 10335202 (+) False fat1a
XM_043242931.1 mRNA downstream 368003 10256662 ~ 10335202 (+) False fat1a
XR_006252049.1 other upstream 68516 9797430 ~ 9797648 (+) True LOC122353686
XR_006252048.1 other upstream 69735 9796214 ~ 9796429 (+) True LOC122353681
XR_006252046.1 other upstream 70750 9795199 ~ 9795414 (+) True LOC122353673
TU3085 other upstream 453727 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 830564 9035086 ~ 9035600 (+) True G2063
TU3224 other downstream 356498 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 368003 10256662 ~ 10333672 (+) False fat1a
XR_006251240.1 other downstream 368003 10256662 ~ 10333672 (+) False fat1a
XR_006251241.1 other downstream 368003 10256662 ~ 10333672 (+) False fat1a
XR_006251238.1 other downstream 368003 10256662 ~ 10333672 (+) False fat1a

Expression Profile