RNA id: XM_043245937.1


Basic Information

Item Value
RNA id XM_043245937.1
length 3830
RNA type mRNA
GC content 0.49
exon number 7
gene id runx1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1525107 ~ 1570888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCATCATCCTTTCCACTGCGAGCGGCGTCCTGGATTTCGGAAGAACGCGTTCTCTTTACGCAGCTCTATACAGCGCGTAAATGAGCGCGTGCACTTGCTTTTACGCGGTTAAAGACTGAAAGCGAAAGCGCCGGCGTCAGGTGCGCGGTTTGCAAGGCGCGCAACTTTACGCACGCTTTCTGAAGGATACGCGAGCGCCAGATCATCCTCTCTTGTGGCACCTGCCGAGAGAGCAAACCGACTCGAGTTCGGTTCGGAACTGCGCTTCACTGAACGGATAGTAAGACGCTCAAACTTCCCACGTCGCGCTCGAGCTCGCGCCCCGGATCAGCTGCTCGCCTGGAGCCCTGGATCCCGATCCTGACCGAGAGCGTGTTCAAAAGATACCAAATGGTTTTTCTTTGGGACGCCAAATACGAACCTGCGCCTGGGCGACGCTTCACGCCTCCCTCGACCACCCTGAGCTCGGGGAAGATGAACGAGGGGTTGCCCCTGGGGGCTCAGGAGAGCAGCGGCGCCGCCCTGGTGGGCAAACTGCGCATGGCTGACCGGAGCATGGTGGAGGTGCTTTCCGACCACCCAGGAGAGCTGGTGCGCACCGACAGCCCCAACTTCCTGTGCTCCGTCCTGCCGACCCACTGGCGCTGCAACAAAACACTGCCCATCGCCTTCAAGGTGGTTGCCCTCGGCGACATTCCTGACGGCACTTTGGTCACGGTGATGGCGGGCAACGATGAGAACTACTCCGCCGAGCTCCGCAATGCCACGGCCGCCATCAAGAATCAAGTGGCTCGTTTCAACGACCTGCGTTTTGTTGGCCGCAGCGGACGAGGCAAGAGTTTTACTCTCACCATCACCGTCTTCACGAACCCTCCTCAGGTGGCCACGTATCAGAGAGCCATAAAGATCACTGTAGACGGACCCCGAGAACCACGACgccACCGACAGAAGCCGGATGAAGCAGTAAAGCCAGGCGCGTTAGCTTTCTCTGAACAGTTGCGGCGAAGTGCCATGCGGTGCAGTCCACACCATGGCCCCGCCCCCAACCCCCGCCCCGCCCTCAACACGCCCCCCTTCAGCAGCCCCGCCCACAGCCAGATTTCCGACTCTCGGCAGATGCAGACGTCTCCGTCCTGGTCGTACGAGCAGTCCTACCCTTACCTGGGTCCCATCTCCACCCCGGCGGTTCACCCCACGACACCCATCTCCCCGAGCCGCAGCGCCATACACTGTCCAGATCTGACGGCGTTCACGGACCCTCGCGTGGGTCTGGAGCGCTCCTTCCCGTCGCTGCCCTCGCTCCCGGACGGCCGTTTCTCGGACCCCCGCGTGCCGTACCCCACGGGAGCGTTCACGTACACCCCCACGCCCGTCACCAGCGCCATCGGCATCGGCATGTCGGCCATGAGCAGCCCGGCCGGCCGCTATCACACGTACTTACCCCCGGCGTACCCGGCGGGCTCCTCGCAGGCTCAGGCGGGCCCCTTCCAGCCCGGCTCGTCCCCGTATCACCTGTACTACAGCAGCGCTGCCGGATCGTACCAGTTCTCCATGATGCCGgcgggaggaggaggaggaggaggagagcgcTCGCCCCCCCGCATCTTACCGCCCTGCACCAACGCCTCCACAGGCTCCGCCCTCCTGCACCCCTCGCTGCCCAATCAGAGCGAGGTGCTGGTGGAGGCCGAGGGAAGCCACAGCAGTTCACCAACCAGCCTGTCAGTGGAGGCCGTCTGGAGGCCGTACTGACGCCGGCTCGACCaataggaggaggaggaggaggaggcggggCCGGATTCACAGCATACAGTACAAAAACCCAGACCCGTGTGACcccggaccacaaaaccagtcattttttttacaattgagATTTATGCGTCATTCGAATATCTATGGGACTATGCATCTGAAAAACTAAGGGTGCTAAAACGCCTAAATATCAGGAGAATCACTCTTGAAGTTGCCCAAATATTTCGGAAATTTACACCGAACATAATCCTTTACTTGCAATCCTAATGCTATTCGGcgcgaaagaaagaaaagtctaATTTTGACCCCTACGATGTGTTTTTGGCCATTGCTGCAAATACAGCcgatgactgcttttgtgctccggGCTCGCGTCTAACAAATAACACACTTCCGGGCGTTCACACACAGAGACGTGAACAGAAACCCGTCATCGCTCGTGAgtttatgaataaattagttTCACGGCCGCGTGGTCTTTTTTAAACAGCGTGGTTCTTGAAGCAGATAAACTTACAGGCTCTCTGTGAGTCACCACAGCTGTAAAAGCTCCATCGATTAGGAAATACGTTTGTTCTCTGGGATGATGTTATATTAATAGGGAAGGTTTGCCAGTGTCATGATAGCAGATGAATCCGGCCCTGAGGACGAGGGCGGCTGAAGCaggtggattctgattggacGCCACGGACGGACGTTTGTTCTTCACAGCGCAGCATGAGACtcgtttgttttttaaagttgtgcatagtttgtattgttattattaatattattgttattattattactgttgtttgTCTCGTCATCACTGTATAACTTTGTTCATCGGTGCCAGATATGTTTCACGTCAAACCAAACCTCGAGGCCGGAAACAGACTCTACGCAAGAACTCAAACGCTTGACAATGAGCACCGTTTCGGTGTTAATAGATGCATGTAAGGAGAACCGTCCcaccaaacaaaaataaaacacatttgcaacTATCTAGAATTTggtcatataaaataaaatactaataatgcattttttttttactgattgcTGATATTagttatatttctttttgttattctgacaataattgaatatttaaataattatttttttttagataaaatgtgcttaaattatcagacatttcataaaataattaatataaaaaaagggaACAGTTATTGCAAAAATCGAATGCTTTATtccataatttaaaataatgaaattttcGTTATGCATTTTacgttttgtttgttgtatatGAAATGATTGCTTGattattttgacaattttaatatttaaataaaagataccGCCTCGGCTTAAAAATCATCTCAGTTGATTTGTAGATAGTATTTATGatacaaacatgcaaaacagatttacataaatacagtgCTATATGTCggaattaaaatacattaccaatattttattcatcattttatggctgttttattacttattatggcaacagtaacatttaaataattcaaaaaaactacaaaaatactaCTCCATTCAGGgaactgcaaaaatataatgctaaacgcaaaaacaaacaaacatgcatcaTAGTCTAACGATTACGTATTGCtcgttttgtttaaataaatattcaagcgttattaaaatataaatgaaagttATCAGTCGTGTAATATAGATCAAATCACAAACCAATCGAGTTTAGTATTCCGTTCAGAACATGATATAAAGAGAATGATTTGCTCAAACGTCCGTCTAGAATATTGTGTCATGCCTTCGGACTCAGATGTGAATGCAGGGACGCACAGAACTGACCAGGCTTGTGTTGAGCTTGTGTAGAGTCCGTTTCAGGTTTCAGCCGTTTTCAGCTCACGACGGCCCCAGGTTTACGAGGCTTCGTCCGCTTCGCTGGACCACGGACCCGCTTTCTGTGTAAATAGACTGCGAGAGACACTCGACGACGCGGCTTTCAACTTCCACGACTGTTAAACTGTTCAGATGCagcttcgttttttttttccttttgtccCTTTTCGACGTTTCTTTGGACAATATAACACTTTGTTGTGAAGAAACTGCTTATTTCTA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0001568 blood vessel development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08367 RUNX1, AML1; runt-related transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396 lncRNA upstream 66506 1485146 ~ 1485643 (+) True G270
TU321 lncRNA upstream 84018 1467485 ~ 1468131 (+) True G227
XR_006251676.1 lncRNA upstream 149534 1357834 ~ 1402615 (+) True LOC122350990
TU469 lncRNA downstream 334764 1905652 ~ 1905963 (+) True G312
TU476 lncRNA downstream 359769 1930657 ~ 1991767 (+) True G318
TU478 lncRNA downstream 360928 1931816 ~ 1933144 (+) True G319
TU480 lncRNA downstream 365285 1936173 ~ 1936647 (+) True G320
TU481 lncRNA downstream 365285 1936173 ~ 1951320 (+) False G320
XM_043244881.1 mRNA upstream 86864 1456086 ~ 1465285 (+) True LOC122348945
XM_043244943.1 mRNA upstream 86864 1461224 ~ 1465285 (+) False LOC122348945
XM_043222498.1 mRNA upstream 110678 1439040 ~ 1441471 (+) False LOC122327253
XM_043222583.1 mRNA upstream 110678 1439040 ~ 1441471 (+) False LOC122327253
XM_043247653.1 mRNA upstream 205356 1337881 ~ 1346793 (+) True LOC122350806
XM_043242418.1 mRNA downstream 3730 1574618 ~ 1583412 (+) True LOC122347221
XM_043237937.1 mRNA downstream 13724 1584612 ~ 1591930 (+) True LOC122343461
XM_043246036.1 mRNA downstream 141154 1712042 ~ 1893196 (+) True zgc:152904
XM_043246053.1 mRNA downstream 141154 1712042 ~ 1893196 (+) False zgc:152904
XM_043246046.1 mRNA downstream 141154 1712042 ~ 1893196 (+) False zgc:152904
TU311 other upstream 110483 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 110710 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 110710 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 431428 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1373949 177716 ~ 178200 (+) True G10
TU616 other downstream 614971 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 912785 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 940833 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 953637 2524525 ~ 2527244 (+) True G474
TU717 other downstream 1024043 2594931 ~ 2596302 (+) True G482

Expression Profile