RNA id: XM_043245995.1


Basic Information

Item Value
RNA id XM_043245995.1
length 3211
RNA type mRNA
GC content 0.52
exon number 10
gene id lamp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2489469 ~ 2498691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTCTATATTTGTGCTATGCAGCttcaacaacattaaaataacacttaaactgccattttttttaattaactgataTTAACACGTATCTAACACTTATATTAAAGTAACGTAGAGTGAGTCACGTTCACGTGAccggagtgggcggggctaaagcGCTCTCATCACATGACTGGAATATTCCGCCTCATGACACAGTGACTCTGCGGCCAGACACCGAACGAACTCGGTTTATCGCCGACAGACGCGCGCTTAAACATCTCGGATCTTTCGTCTTCGGCCCGCGGGCTTTCTCACTCAGTGTTCGGGGTTCTGACGCTTTTCCTGACGGACCGAGGCATGCCGGTCACACGGAGCTCCGCCGCAGGTGTCTGCTGGATCCTCCTGACGGGGTGTGTGTTTGCGGCTCACTCTGTGACATTTGAGGTGAAGGATGGAAACTCCACCTGCATTAAAGCAGATCTCAACGCCAGCTTCAGCATCACCTACACCACAACCAACGGAAcgagcgCGGTGAGGTTTGCTCTTCCGTCCTCGGCGGTGGTGGGTGAGAGCAGCTCCTGCGGTGAAGAGGAGCTGCAGGTGTCCTTCGGAGCCGGTcactctctcacgctcctgttCTCCAAAGACGAGGGGCTCTACCGCGTGTCCAACATCAGCCTGCAGTACAACCTGAGCGACTCCAGCACCTTCCCGCAGTCCTCCAGcacagGACTCGTGACGGTGATGACGAACGTGACGGAGATCTGGGCGAGGCTGAACAGCACCTACAGGTGCGTGAGCTCCAGCTCCATCAGGCTGAGCTCCGAGGCCAACCTCACCTTCTCTGACGTTCACCTGGAGGCTTACATGAGAGGAGCGGACTTCAGCAGCGACGagagtgtTTGCAGTGCTGATCAGACTGTTACGACCTCCGCCCCGACTCAGTCGCCCAGAACCACGGCCGCCCCGTCTCCTGTCCCGCCGCCGGCTCCGGAGCGAGGGAACTACACCCTCACTGACCGTAACGGCACCGCCTGCCTGCTGGCGCTCATGGGCCTGCAGCTCAACATCACACACCGCTCCAGAGCCCTGAACCAGACGGTCACCGAGATCGTGAACCTGCAGCCCAACCGCACCGCAGCCTCGGGGTCGTGTGGGGTCACGGTCGCCACTCTGGTGCTGACGGAGGATCTCACCAACCTCACCTTCACCTTCACactgAACTCCACCACACAGAAGTATTTCCTGAGCTCTGTGAGCGTCTCTGCTCTCTGGCCGGACATGACAGAGCGTTTCGTGGAGAGGAACGCTTCTCTGAATCTGCTGCAGTGCAGCGTGGGTCGCTCGTACATGTGCAGCTCGGAGCAGACGCTCTCCATCGTCTCCAGCTTCTCCATCAACACCTTCAGACTGCAGCTGCAGCCCTTCAACGTCACGGCCGGACGCTTCTCTGCAGTGGAGGAGTGTCGTGTGGATCAGGAGAACATGCTCATCCCCATCATCGTGGGCGTGGCTCTGGCCGGTCTGGTGCTGATCGTTCTCATCGCCTATCTGATCGGAAGGAAGAGGACACACGCCGGATACCAGACCATCTGATCACACTCCGTCTGCGCTctgattagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggGGTCAGCTGCAGTGTCTGGGTGTGTGTGATCGCTGTGAGGTCAGGGGTcagctgcagtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtatgtgtgagatcGCTGTGAGGTCAGGGGTCACCTGCAGTGTGTGAGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcaAGGGTCAGctgcagtgtgtatgtgtgtgtgtgtgagatcgcTGTGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcagGGGTCAcctgcagtgtgtgtgaggtcagGGGTcacctgcagtgtgtgtgtgagaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgttagagatgTGCGGGTGAGCTCAAACATCATCACATGATCATTGGACAGAGCAAAGAAACCCAAGACGCTGTTTTTGGGCTGCTTTCGAAGGCTTTAGTAACTTCAGTCTGAACCTGAACGACACACGACACACACTTCCTCTCTGCAGGAAAAAGTGCATTGAAAGCAGGTTCATATTTCACACAATGCAGTTAATATTTGCGACATTAATGATTTGATCCACCTGCAATTAAtcagaatgtgtttttattacctGACCACAGAtataacctgtgtgtgtgtgtgtgtgtgtgagagatcgCTGTGAGGGTCAAGGGTCAACTGCAGTGGTCATTAGTGTGTGTGATTTCTCCGTGAGGtcaatgtatgtgtgtactgtaaggtgtgtgtgtgtgtgtgtgtgatggactAGACACAGCTTCAGTCTCATTCATCCTCATCAAATCAGACTTGTTTTATTCTAATAATCTTGCTGTGGGTAGTTCACACTGATCCTGAGACACCCACGCTCtttattctaaaatgctgaACCTTTTAGTGTACTGAATTTAATTGGATTCATGTAGAAACAAGTTTATATcagatcgtgtgtgtgtgtgagagagagagagagagacgctggCATTAAATGACACCtgatgtaaataattaatgtttgttcTTGTTTCTTGGATCATGAAACCTGAATAGAGCCGCTGGTGAATTACCCATgatcctccacacacacacacacacacacacacagctgtaagGGGTCTGCTCACACAGATTTAAAGTGTGGTGTTTTGTGAGACTCGTGCAGTGAATCTGTGTGAACCTGAACCCTAaaaacatgatgatgatgatgaagatgaagttCATTTTGTTGCTCGAGTGAAAAGGGAAGTGAATAAATGTGAGTCTGAAACTATATCTTGTGCTTTCCTAAGACATCTAAAGTGCATGTCAGTgacatcatcatcttcatcatcttcatcggcagcagcttcctgacagtgatgatgatgatgatgaagatgaagccCACCGGTCACGTCTGGTGATTCGTCTGGTCACATGACTGCTGCGCTGATATTTTTGTAGTGaatgtttggttatttttatgCTTCAAGGTTTgaggttaataaataaataatgacttaCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU921 lncRNA downstream 109528 2378431 ~ 2379941 (-) True G617
TU847 lncRNA downstream 117718 2369634 ~ 2371751 (-) True G563
TU917 lncRNA downstream 129137 2349200 ~ 2360332 (-) True G614
XR_006251541.1 lncRNA downstream 147180 2334342 ~ 2342289 (-) True LOC122349938
TU837 lncRNA downstream 195952 2292924 ~ 2293517 (-) True G559
TU988 lncRNA upstream 16963 2515654 ~ 2516175 (-) True G647
XR_006251814.1 lncRNA upstream 50233 2548924 ~ 2552261 (-) True LOC122351916
TU1005 lncRNA upstream 50233 2548924 ~ 2552160 (-) False LOC122351916
TU971 lncRNA upstream 57552 2556243 ~ 2558864 (-) True G638
TU997 lncRNA upstream 62664 2561355 ~ 2561966 (-) True G653
XM_043238347.1 mRNA downstream 19003 2459690 ~ 2470466 (-) False tmco3
XM_043238339.1 mRNA downstream 19003 2459690 ~ 2470466 (-) True tmco3
XM_043238363.1 mRNA downstream 19003 2460966 ~ 2470466 (-) False tmco3
XM_043238355.1 mRNA downstream 19003 2461132 ~ 2470466 (-) False tmco3
XM_043238377.1 mRNA downstream 19003 2461219 ~ 2470466 (-) False tmco3
XM_043245979.1 mRNA upstream 1191 2499882 ~ 2511330 (-) False cul4a
XM_043245978.1 mRNA upstream 1191 2499882 ~ 2511327 (-) True cul4a
XM_043246016.1 mRNA upstream 20032 2518723 ~ 2523318 (-) True prozb
XM_043241449.1 mRNA upstream 25918 2524609 ~ 2529488 (-) True f10
XM_043241463.1 mRNA upstream 32205 2530896 ~ 2534653 (-) True f7i
XR_006250784.1 other downstream 884485 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1359832 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1861651 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2050341 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 2053344 435808 ~ 436125 (-) True G67
TU999 other upstream 190074 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1509149 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1799619 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3278880 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3347385 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile