RNA id: XM_043246100.1


Basic Information

Item Value
RNA id XM_043246100.1
length 2071
RNA type mRNA
GC content 0.52
exon number 10
gene id dok7b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19966867 ~ 19984964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTAAAAACCTTTGAGTTGTAGTGTAGGTCTGCGGTAAGAGGGTGGGCTAATGCATGTGTGAGTTATGCGGGTGAGAGAGAGTTTGTGCGTGTTGCAGCAGTGCAGACAGTTCTGGGGGTTATTTTGAAAGTGACCCCCTCGCTGCCGCGGACCGCTCACAGCTGTCGGGAACCATGACACAAGATGACGGATACGGTTGTCGTAGAGGGACAAGTCAGACTTCGAGAGGGGAAAAAGTGGAAAAACAGATGGGTGATTCTTCGGAAACCTTCGCCGGTTGCAGACTGCCTGACCTTGCTGGTGTATAAGGAGCGTGGAGAGAAGAGTAAAGGACAGCGGGAGAGGAATCAGGCCACACTGAGGGATATCTGTGGACTGGAGGCTCTTCAGGGGTTTGATGGAGTGAATTACGCTCTCAGTCTGCTATGCCTGAGCCAGTCTGTCATGCTAGGCTTCGACAACAAAGTGTCTCTTCTAGCCTGGGATGCTCGTATCCGCTACAGCCTTGGAGAGGTCCACAGGTTTAATGTCAACGTCCAGCCCGGCACCAAACTAGAAAGTGGCCCTGCCTCGCTGCATTTGTGCAACAACTTGCTTGTCATCGCCAGAGACCTGCCTCCAACTGTCCTCGGCCAATGGAAACTGTCAGACTTGAGACGATATGGTGCCGTTcctaatggatttgtttttgaGGGAGGTACACGATGCGGCTACTGGGCTGGTGTTTTCTTCCTTGCATGTGCCGAAGGAGAACAGATCAGTTTTTTGTTCGATTGCATCGTACGTGGCATATCGCCAAGCAGGGGGCCGTTTGGACTGCGTCCAGTCCTGCCAGATCCCAGTGCTAACCCATCATCTATAGAAGACAGGATTAGCCAGGAGGCAAGTGAGCTAGAGAAACGGCTCAGCATGCTATCCATTTGTAGTCATCACAGCAGTGCAGCCTCCACTTTCAGTTATGGCGCCTCCTTGGCAGGAGATGATCGGAGCATCTCCAGCTCCTCCTCCGAGGCCAGTCATTCTGATAACAGCCTGGGCAGCCGTCTGGCGATATGGTCTGAGCCAGTCAGACACCCCACCCCTGTCGATCCAatatcaccatcatcatcccTGTTAGGGGTTGCGGGATCTAAGAGTACAGCTTGTTCTGTCAGTACGTCCAGTGACGAGCGTCTATACGGAGCAATGATGGGAGGGCTCCGTCCTCCATCCAAGCCTCCTCACCCTAGAGGCCTTCAAGAGGCGGGCCGCCAGAGCTCAACAGACAGCGGTATTGCCACCGGAAGCCACTCATCATATTCTGGAAGCTTCTCCTCCTACACTGGTAGCATGGATATTGGGCATGGAGAGACTGATGAGTTTGGATCCTTAACAAGCCTCCCTCAAAACCCCAATTCAAACTCTATCTCCCTTATCAACACTCCAGTAAGGACGATTCCACTAATTCCTGAGCACAAACCGTGTGTGTGTCCACTCAGAGAGGCTGCTCAAATGTACCAGGTTCCCACTCCACCTCTGCAGAATTACGACATCCCCCGCAGGCTCCTACAACACCAGCCCTCCGGTCAGGAACAGTTTTTGACTGCTGAAAGCCAGGGACAGAGGCCTGAATATGGAGCTCTGGGACATGAAGGCATTCCTGCAGATGCCATCCCCAAACAAACTGTCCCACAGAGATTGAACTGTGAAGGAGCGCCGCCCCCTGAAGGTGCCACTACACTGCAATTAAAGCCAGCCATCTGTCCTGACTGTGGGAGAGGAAAGATGGAGGAGAGGAGCAGGTGCGAGATGAGAAGCAGCTCTGAGGAGCAAAAGTCTGACGTCTTGGTTTTCTGTCCTGCTCAGCTGATCCAAAAGGCAATTACGAGCAGATGGCATTTATGACTGATGCGTCCAGGTGGCCACAGTTCAGAGCTGGAGAATATGGAGAGGCAGGACTGACAGGTATTGACAGAGTTCAAGGTGATTTCGTTAACTATGTGAATATCCCCATCAGTCCTACATCTAAACGGCAGCTGTACTATATGGAGCTAGATCTGCAGGACCGTCCAGAGTCAAGCCACACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6683 lncRNA downstream 30458 19938019 ~ 19938401 (-) True G4713
TU6634 lncRNA downstream 32100 19936390 ~ 19936759 (-) True G4671
TU6573 lncRNA downstream 336606 19631098 ~ 19632253 (-) True G4615
TU6568 lncRNA downstream 357344 19608383 ~ 19611515 (-) True G4611
TU6780 lncRNA upstream 152108 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 170700 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 215031 20199995 ~ 20265069 (-) True G4870
XR_006250990.1 lncRNA upstream 280321 20265285 ~ 20266183 (-) True LOC122345304
TU6996 lncRNA upstream 457988 20442952 ~ 20444794 (-) True G4924
XM_043245252.1 mRNA downstream 52527 19911680 ~ 19916332 (-) True adra2c
XM_043249777.1 mRNA downstream 86135 19881125 ~ 19882724 (-) True hmx1
XM_043248486.1 mRNA downstream 89208 19878191 ~ 19879651 (-) True hmx4
XM_043251231.1 mRNA downstream 183212 19777091 ~ 19785647 (-) True clgn
XM_043251226.1 mRNA downstream 211503 19665097 ~ 19757356 (-) True maml3
XM_043242601.1 mRNA upstream 10226 19995190 ~ 20032019 (-) False rgs12b
XM_043242592.1 mRNA upstream 10226 19995190 ~ 20031979 (-) True rgs12b
XM_043242611.1 mRNA upstream 10226 19995190 ~ 20031976 (-) False rgs12b
XM_043242620.1 mRNA upstream 11809 19996773 ~ 20031991 (-) False rgs12b
XM_043242628.1 mRNA upstream 11809 19996773 ~ 20031990 (-) False rgs12b
TU6528 other downstream 429713 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 2088442 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3894939 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4737973 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4939239 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 111991 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 127786 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 128178 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 152108 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 152108 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile