RNA id: XM_043246123.1


Basic Information

Item Value
RNA id XM_043246123.1
length 1671
RNA type mRNA
GC content 0.45
exon number 9
gene id fgg
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14592215 ~ 14596486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTCCATCTCTGAGCAGGACCTTGGTCGGATAAATATCCTGCAGCAGTCAACAGTTACTCACAATCTGAAGGGTCCAGACTGATTGCAGGTCCAGCATGGCCTCCTTCATGCAAGTGGCTGTTTCCATCCTGCTGCTGTCCACATTAACCTCAGCTCAAATGAGAGGTGACTATTCATCAGCAAATGATTTATGTAAACCGAACGATGGGTTTGGGATATACTGCCCAACCACATGCGGAGTGGCTGATTACCTGCAGAGGTACAAGCCTGATATGGACAGAGAGCTGGATCAAATGGAACAGGATTTGGAGGATCTCGCCAACCTTACCAGAGGAGCACAGGATAAAGTGGTCTTCTTGAGAGACTCGGAAGCACAAGCACAAAAACAAGCACCAGACACATACATCAAAAAATCTACAAACATGCTTGATGACATACTGCGATTTGAGAAGAGCATTCTGGCTCAAGAAGATCAAATATATCAACTGCAGTCGATCCTTCAGGCTAATGAGAAAAGAATAACTGATTTGAAGCAGATGTCTGTTCAGCTGGACCAGATGTGCAAAGAGCCCTGCAAAGACACTGTGGAAATTCAGACCATCACAGGCAAAGACTGTCAGGACATTGCAAACAAAGGCGGTAAGGTCAGTGGGCTCTACTATGTGAAACCAGCCAAGGCTCCTGAGGCTTTCCTGGTGTACTGTGATATTGACAGCTTTGGACGTGGGTGGACTGTACTTCAGAGGAGACGTGATGGAAGTGTTGACTTTAACAAAAACTGGATCCAGTATAAGGAAGGTTTTGGGTACCTCTCACCAGATGACAGAACAGAATTCTGGCTGGGAAATGAGAAGATACATCTGCTGTCTGTTCAGTCCAGTGTGCCTTATGTACTGAGGATAGAGATGGTCGACTGGGACGGCAACAAAAAGTATGCCGACTACGCCACTTTCAAACTTGGACCAGAAGTTGATGCGTATCGCTTGACGTATGCTTATTACTTTGGTGGAGATGCTGGTGATGCCTTTGATGGTTATGATTTCGGTGATGACCCCAGTGACAAATTCTACACATCTCACAATGGCATGCAGTTCAGTACACCTGACAAAGACAACGACAAGTTCCACAATAACTGTGCCTTGGAAGAAGGGTCTGGCTGGTGGATGAACCGATGCCATGCTGGTCATCTCAACGGAAAATACTACCAGGGTGGCAAGTACACAGAGAAGGACACACAGAACGGATATGACAATGGCATCATCTGGGCCACATGGCACAGTCGCTGGTATTCTCTCAGGGAAACCACCATGAAGATCATTCCCATCAACAGAATCAGCACTGATGGTCAGCAAAGTGGTGCCAAGCAGTTTGGAGGCCTGGGAGATATTTAAAGACCTCACCAAAGCTCCCTGCATTGTTCTGAGCTATCATTTTGTTATTGTGAAGTTAAAAGTACATGGGAATAACATGGGCAAGACATTTTCAAGTGAGTGTAAACATGCCTGTTGGTTTCTGAGATTTTTCATTCTACACCAATTAATTCTGGAAAAACTTCATAAGACATActggtcatttttgaaaaattggaTCGACTCTCTTCTACTGCCACTGGTCTAACACACTGAACTGtcaatgaatgaataaagttCTCTGTCTTTTGTAAATGAAA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0051258 protein polymerization biological_process
GO:0007165 signal transduction biological_process
GO:0005577 fibrinogen complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03905 FGG; fibrinogen gamma chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4745 lncRNA downstream 100577 14490724 ~ 14491638 (-) True G3318
TU4679 lncRNA downstream 179240 14412767 ~ 14412975 (-) True G3266
XR_006251753.1 lncRNA downstream 324430 14249605 ~ 14267785 (-) True LOC122351408
TU4640 lncRNA downstream 623435 13961708 ~ 13968780 (-) True G3232
TU4638 lncRNA downstream 665154 13924275 ~ 13927061 (-) True G3230
TU4808 lncRNA upstream 14011 14610497 ~ 14610786 (-) True G3357
TU5004 lncRNA upstream 39208 14635694 ~ 14636587 (-) True G3475
TU4985 lncRNA upstream 64988 14661474 ~ 14687860 (-) False usp53b
TU4986 lncRNA upstream 64988 14661474 ~ 14663417 (-) False usp53b
TU4987 lncRNA upstream 64988 14661474 ~ 14687860 (-) False usp53b
XM_043257370.1 mRNA downstream 9994 14554871 ~ 14582221 (-) True dchs2
XM_043241031.1 mRNA downstream 51769 14536730 ~ 14540446 (-) True sfrp2
XM_043243358.1 mRNA downstream 61647 14522289 ~ 14530568 (-) True arfip1
XM_043236644.1 mRNA downstream 71257 14500218 ~ 14520958 (-) True fhdc1
XM_043239429.1 mRNA downstream 118658 14459795 ~ 14473557 (-) False trim2a
XM_043251218.1 mRNA upstream 18828 14615314 ~ 14623229 (-) False map9
XM_043251219.1 mRNA upstream 18828 14615314 ~ 14623200 (-) True map9
XM_043251220.1 mRNA upstream 18828 14615314 ~ 14620248 (-) False map9
XM_043251217.1 mRNA upstream 18828 14615314 ~ 14620248 (-) False map9
XM_043248985.1 mRNA upstream 66792 14663278 ~ 14684861 (-) False usp53b
TU4627 other downstream 707979 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 749572 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1202890 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1203709 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 1300492 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 150343 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 328599 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 424156 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 634053 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1472691 16069177 ~ 16073920 (-) False alg11

Expression Profile