RNA id: XR_006251556.1


Basic Information

Item Value
RNA id XR_006251556.1
length 1812
RNA type transcript
GC content 0.52
exon number 6
gene id alg11
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16069177 ~ 16073920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaacATCCGACCAATGGTAAACGCTTCCGGGTTGTGACGTGGGCCGTGTTGTGTTGTCATACTTGAGGAAGATGTCAGCGCACGATCACTTGTCTTTTTGTCTGTGCGATTTAATCAGGTTACTGTGGTCACTGCTGTTGCCATGTTTCTATCTGAGTCTTGCGCTGACTGCcgtcctcttcctcttcatcacGGGAGTGAGGACATGGCTGCagatgaagaggaagagcaGGAGAGCTCAGGACGAGCGGCCCGCTGTGGCCTTCTTCCACCCGTACTGCAatgcaggaggaggaggagagagagtgCTGTGGTGTGCTTTACGCGCTCTTCAAAACAGGTACAAAGATGTGTCCTTCGTGGTGTACACAGGTGATCAGGGTGTGATGGCTGATGAGATTTCAGATAGAGCGTGGCGGCGCTTCAACATCAAACTGCCCCGAGACGTTAAGTTTGTGTTCCTGAAGCACCGTCTCCTGGTGGAGGCCAAACTTTACCCGCACTTCACCCTTCTGGGGCAGAGCGTGGGCTCCATCTTCCTGGGCTGGGAGGCCTTGACCGAGTTTGTTCCAGACCTCTATATCGACTCAATGGGATATGCCTTCACCCTGCCGGTGTTCCGTTATCTGGGTGGATGTCACGTGGGAAGCTATGTGCACTACCCAACCATCAGCACTGATATGCTGTCAGTGGTTCGAGAAAGAAACCCAAGGTTCAATAATGTAGACTACATCTCGAGTAACCCTGTACTGAGTGCCATCAAAGTGATCTACTACTGTGTCTTTGCTCTGCTGTATGGCCTGGCCGGCTCCTGTAGCGATGTAGTCATGGTGAATTCCACCTGGACTTTGGGTCACATCCTGGCTCTGTGGCGCGCTCCTAGCCGCACCACTGTGGTCTATCCACCCTGCGACGTTCAGGCCTTCATGAACATCGAGtttgaggatgaggatgaagagaaggagagaaagaagtGTCATACTCTGGTCTCCGTGGGTCAGTTCCGGCCTGAAAAAGACCATCAGCTGCAGATCAAGGCTTTTAGAAAGCTGCTGGACAGGAGGGGGGCGGAGCCTGCCATTAAGCTGGTGCTGATCGGTGGATGCCGTAACCAGGAAGATGAAGACAGGGTTCAGATGCTGAAGGGACTGTGTCTGGATCTTGGTGTGGCAGATAGGGTGGAGTTTAAACTCAATATCCCATTTGAAGAACTGAAGAAAGAATTAACAGATGCCACGATCGGGCTGCACACAATGTGGAACGAACATTTCGGCATTGGTGTGGTGGAGTGTATGGCTGCAGGAACGATCATCCTGGCTCACAAATCCGGCGGTCCGAAACTGGACATTGTAGTCCCCTATGATAACGGTCCGACTGGCTTCCTGGCGGACGATGAAGACAGTTACGCAGACGCCATGGAACGAATCCTTTCCATGAGCCCTGCGGCTCGATTAGAGATCCGACAGCGGGCACGTCAGTCCGTCAGCCGCTTCTCAGACCAGGAATTCGAAGCCTCGTTTCTTTCAGCCGTGAAGCCTCTAATGTCAACACTAGGACTGTGAGGGACAGAGGAGGGGGTCACGGTGTAGTTCAGTCTAGCTCAGCACGTGCTGACTCCGTAGCGCTTCATACCTGCCTGTCTTGTGAACATTCGCTCTTTAAGTAACAGCACTGAGGAGAGAGAGACGCCAAATTAAACAACAcagaaaagaggaggaggattATAAGAGCCATCACAGTTAAAAACAGGAAGAAAGAGCGTCCGCTGCGATTGAGAGGAAAATGAGGTGCTGTGCGTTTCTCTTCCTGCT

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5330 lncRNA downstream 52018 16016762 ~ 16017159 (-) True G3735
TU5281 lncRNA downstream 226367 15842355 ~ 15842810 (-) True G3697
TU5265 lncRNA downstream 369215 15699710 ~ 15699962 (-) True G3681
TU5263 lncRNA downstream 370166 15698487 ~ 15699011 (-) True G3679
TU5262 lncRNA downstream 370872 15696585 ~ 15698305 (-) True G3678
TU5337 lncRNA upstream 1386 16075306 ~ 16078797 (-) True G3739
TU5359 lncRNA upstream 34406 16108326 ~ 16108610 (-) True G3758
TU5361 lncRNA upstream 37218 16111138 ~ 16111548 (-) True G3760
TU5363 lncRNA upstream 85772 16159692 ~ 16160594 (-) False march4l
TU5453 lncRNA upstream 190172 16264092 ~ 16264358 (-) True G3819
XM_043232636.1 mRNA downstream 359331 15701109 ~ 15709846 (-) True snapc3
XM_043242847.1 mRNA downstream 418868 15632065 ~ 15650309 (-) True sugt1
XM_043241066.1 mRNA downstream 442767 15585579 ~ 15626410 (-) True dnajb14
XM_043246182.1 mRNA downstream 487636 15527154 ~ 15581541 (-) True pspc1
XM_043237482.1 mRNA downstream 890731 15097021 ~ 15178446 (-) True cntln
XM_043240150.1 mRNA upstream 85967 16159887 ~ 16198263 (-) True march4l
XM_043247638.1 mRNA upstream 235089 16309009 ~ 16321592 (-) True c1h3orf70
XM_043235354.1 mRNA upstream 264788 16338708 ~ 16359025 (-) False igf2bp2b
XM_043244326.1 mRNA upstream 297568 16371488 ~ 16387107 (-) False ubac2
XM_043244320.1 mRNA upstream 297568 16371488 ~ 16387107 (-) False ubac2
TU5142 other downstream 838291 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 1039557 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 1143814 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 1320202 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 2184941 13882278 ~ 13884236 (-) False LOC122350629
XR_006250498.1 other upstream 1741904 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 3462052 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 4023035 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 4038830 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 4039222 20113142 ~ 20113213 (-) True trnae-cuc_4

Expression Profile