RNA id: XM_043246354.1


Basic Information

Item Value
RNA id XM_043246354.1
length 4503
RNA type mRNA
GC content 0.53
exon number 22
gene id vps54
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26803408 ~ 26819171 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCTTGGTTTCGCGCGCGGTGCATTCTGGGCCGGTGGCCGGCGGACCGCAGAGCGAGCGAGCTGTTCCGTCGCCGAGGATGTGAGTGGGATCCGACGGTATTATGATCTCCGGGAGCTGCTTGATTTCGCATAACAGTCAGCCTCGTATGTGAGGGATCCGCAGTGATGTCCTCCAATCAGGGCTCGTCTCCGATCTCTCAGTCCAGCGGCCCCGGTGATGGGCTCTTCAGGAAGCCCCGGGACCCTTCGCTGGCCCCTAGACACTATCGGACGCCACGCTCCTTACCGGACGTCTGCCCTAAAGAGCCCACCGGTGAGGGTCGTGCCCTCTGTGACGGGCCGTCTGTGGTGGCCGACCAGCACCGCTGGACTGTGTTTAACTCTAAGGTCAACCTCCCGGCGGCCCTCAACGATCCCAGGCTGGCCAAGAGAGAGTCAGACTTCTTCACGAAGACGTGGGGCCTGGACTTCACCGAGACCGACGTCATGCCCTCGTTCTACCTGCCCAGCATCAGCCGAGATCACTTCAGCTCGTACCTGCAGGAGACGGCTCAGATCTTCATGAAGCCTGAGTTTGTACTGAATGATCCAGCCACGTTTAACGCTGTGTTGCCGTGGTCTCACTTCAGTGTTGCCGGGGGCAAGAACAGCCGAGATGTTGCATCGTCACGGTTACTACAGGAAAAGTTGAGTCACTATCTGGACGTGGTGGAGGTGAGCATCGCTCGGCAGATCTCTCTCCGCTCCGAGGCCTTTTTCCACGCCATGTCGTCGCAGCATGAGCTCCAGGACCGTCTGCGAGAGACGGCGGAGGCCGTGGCCAAGCTCCGCGCTCGCACCGCCGCCATCGACCGTGTGATGTGCCGCGGGCCGCTGCGAGCGCTGAGGGACGCACTCACACGAAACAACTGCATCAAACTACACAACAAACTCAAGCTGATGGCTGCCGTGCACCAGACGCAGCCCACGGTGCAGCTGCTGCTCTCCACCTCAGAGTTCGTGGGAGCGCTGGAGCTCATCGCCACCACCAAAGAAGTGCTGCAGCAGGAACTGCAGGGCATTCACAGCTTCAGACATCTGGGCTCTCAGCTCTGTGAGATGGAGAGGTTGATCGATAAGATGATGGTGGCTGATTTCTCCACGTATGCCCAGAGCGATCTCAGCCGACCCTTCGAGGAGGACAGCCAGGTCCTGGAGAAGGTCACAGAGCGGCCTGCGGCATCGGGAAAGGATCGCCTGCAGTCTCTGGTCTTTGGTCTGTTGAGGCAGAGGAAGCTGGATTTCCTGGACATCTACAGCGAAGAGATGGTGCGCGCCGCCAAGAACGTGGTTCGACAGTGTGTCGTGAAGTCTGTGTCGCAGATCAGTGAGATCGACGCCGACGCTGTCAAtaggtttcACGAGCAGATGCGCCTGATGACGTTTAATCAGTGGTTTGATCTGCTGCTGGATATTTTTGAACACTTCATCCTGTTCCTCAAGAGGATCAAGGCTACGCTTAGCGTCATCCGCAACGTGGTGCTAGAGGTGCTGGACAGCAGCCAGAGGAGTCGCCTGGCGGACGTTTCCACGGCAACCGATCATGCTGACGGCAGGACCAATGAGgacgaagaggaggaggaatCTGGAGGCGGAGAGGCGGAGCTGGCATATCTCACGCACGAGGGGCTGTTCATCAGCGACGCCCTGAATGATGCGGAGCAGCGCAGTAACGCCGCGGCACATGCTCAGACGAGAGCGCAGGCGCGCACCGACGCCGGCGGGAGTGACTCGGCCTCCGCCACCACCGAGTCATCCTCCAGCAGGGAACACAACTCCAACACTACCTCCTCCCTGCCCTTAGGGGGCGCCGCTGCCATCAGTGAGGACGTGATGCCGTCTGATCTGGAGTTGGGTCGGGTGGCCAATAACGTCCAGGAGCTGCTGTACACGGCCTCAGACGTCAGTCATGACCGCTGCGTCAAAGTGCTCATGACACGGGccaaggaCGGCTCTCTGGAGCGTCTGAGCTCGTCAGAGTTCGTGTGTCTGAGTCAGGCGGTGGAGTCGTTCGTGTCGGACACCGAGGAGCTGTGCGGGCGGCGCAGCGTGAGCCTGAGGGGGGCGCTGCAGAGCCAGGCCTACCGCTTCGTGCAGCGCTTCCACGAGGAGCGCAAGACTAAACTCAGTCTGCTGCTGGATAACGAGCGCTGGAAGCAGGCCGAGGTCCCCGCTGAGTTTCAGGATCTGGTTGACTCCATCGCTGACGGACGCATCACTCTGCCCGAGCGCAAACCCTCTGGGTCCGAGGACAGGAAGCCCAGTGAGTTTCTGTTTGTGGACGGGCAGAAGTATGCCGTGGTGGGGACGGTGCTGCTGCTGATACGGATGTTTCTGGAGTACTGCCAGTGTGTGAATGACATTCCCTCCATCACCACCGACATCCTCACACGCCTCGCTGACCTGCtcaagCACTTCAACTCCCGCAGCTGTCAGCTGGTGCTGGGGCCGGGAGCTCTGCAGGTGGTCGGCCTGAAGACCATCACCACCAGAAACCTGGcTCTGGCGTCTCGCTGTCTCCAGCTGGTGGTTCACTACATCCCTGTGATCCGAGCACACTTTGAGACCAGACTGCAGCCCAAACAGTACAGCATACTGAGACACTTCGGCCACATCACCAAGGACTACAACGATCACATCGCAGAGATCTCCGCTAAGCTGGTGGCCATCATGGACAGCATGTTTGAGAAGGCTCTGTCGAAGTATGAGGTGAAGGCGCCGATGCCGTCCGCCTGCTTGCGTAACGTGTGTAAACAGATGGCCAAAATGCACGAGGCCATTTATGAGCTCTTACCGGAGGAGCAGACGCAGATGTTGTTCCTCAGGATAAACGCCAGCTTTAAGCTGCATGTGAAGAGACAGCTAGCGCGGCTAGGAGTCATCAATGATGGAGGACCTCAGTACGGgctggTGATGGTGGACGTGGCGTTTTACTCGGAGAACGTGCAGGCTCTGCGCTCTCTGGAGCGTCTGGACTTAAACATGCCGGAGATCTGGGAGCAGAAGAGGTGATGACGGACAGCTAGTCTCGGCCAATCAGGCCTCTCCGTCACTCCTGCCATCTCAGTGACCAGCTCCGAGGTCGGTGGACAAACAGACTGACGCTCTCCACCTCCTGTGCTGACAGGACAGGCTTCTACAGAGACCAAATCAGGACAAGCTGGAGGGTTGATCAGTCGCCGCTGGGAATTGTGGGGAATGTTGTTTTGTTGCCGGAGACTCGTCCTCAGTGCCTCCTTCAGTACCGCCACTACAGTGCAACTTTCCCTTCGTGTGCAATTCtgattattgttgttattattgctgAATTATTTAATCACAGAGGAATCATgaaatggttatttattttaatcaattttgaTGTTGGTTGAtcaatcatgtttttgtttttttttgtttttttccacgtGAAGCTTTCAGGTCATAACGGCCAGAAGGAGAACTAATACTAAAAAGGGTTTTAAACACATTTCGCTGACTACTTCTTTGACTTTCcacccacattttttttttttagtggctGCTTTTGGTTTCGTGTTCAAGGCCGCTGAGTCGAAGTGTTAAAACTCTGAAGGAATTCTGGTCCAGGTTTTTCAGGAGAATCTGACTATTTAAAAGAGGTTTATATGTGTACATGAAGAAGATCTGCTGTACTCATCTTcaatgaaatcaaatcaaatcttttACAGTAATCAGGATTAGATGAGTGCTGCAAAACAatgaatcacatccaaaataaacgctttttgtttacaatacgtgtgtgtgtgtgtgtactgtgtatatttattatttatatttaaatacacatacacgtGTATATCAAAGAAGAATGTTATAGTAacgtattaaatatatttctaatattaatatatgcatgtaaatatttctaaaatgtgtgtgtatttatatatacataataaatatgcacggTACACATacatcttttattttagatgtgattaatcgttcaGCACTAGATGCAAACTATTGAAGATGGTGTTTAAACTCACCCccagaagagaaagagaaaccgTCTGAAAGTGAAAGATCTTTACATCTTTATAGTTTCCTGTCCATGCAGACTAAAGCGTACGCAGTGTTACTTTAACCCGATGTCATGTGAGTAAATCGAGGCTTGCGGTCGGTCGGTGTGAATGGTTTTCAATCACATCTTGTTTTGCTGAGTTTCTGTTCAGGAGGATCCACGTATCGCTTTAACACTCGTTCTGTCCGGTTCAAAAGTGCCTAACCTTTTATTTGGTATCAAACTGACTCAAACTGTACATTTGTGGGCTACAGTGCCTAGtctgttcgtgtgtgtgtgtgagtgtgtatgagtgtgtgtttcgAGGGCCCTTGTTGCGGCAAAGAAATATACTGATGGGAAACTCTTGTGGCATGTTTGACCTTTTAAAATGTggtactttttattattaataaagccACGGTGAACATAAA

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10053 lncRNA downstream 38928 26760004 ~ 26764480 (-) True G6870
TU10058 lncRNA downstream 45116 26754732 ~ 26758292 (-) True G6874
TU10059 lncRNA downstream 45116 26757198 ~ 26758292 (-) False G6874
TU10056 lncRNA downstream 54452 26748723 ~ 26748956 (-) True G6873
TU9983 lncRNA downstream 112918 26689354 ~ 26690490 (-) True G6834
TU10030 lncRNA upstream 43932 26863103 ~ 26865737 (-) True G6856
TU10071 lncRNA upstream 98508 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10072 lncRNA upstream 98508 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10082 lncRNA upstream 113961 26933132 ~ 26942207 (-) True G6887
TU10127 lncRNA upstream 165373 26984544 ~ 26985660 (-) False LOC122349164
XM_043238058.1 mRNA downstream 454 26802180 ~ 26802954 (-) False c1h19orf53
XM_043246825.1 mRNA downstream 5394 26787308 ~ 26798014 (-) False slc25a23a
XM_043246834.1 mRNA downstream 5395 26787308 ~ 26798013 (-) False slc25a23a
XM_043246843.1 mRNA downstream 5395 26787308 ~ 26798013 (-) False slc25a23a
XM_043246851.1 mRNA downstream 5395 26787308 ~ 26798013 (-) True slc25a23a
XM_043251440.1 mRNA upstream 1902 26821073 ~ 26833754 (-) False peli1a
XM_043251449.1 mRNA upstream 1902 26821073 ~ 26828425 (-) True peli1a
XM_043223950.1 mRNA upstream 31058 26850229 ~ 26853814 (-) True sertad2a
XM_043224041.1 mRNA upstream 38286 26857457 ~ 26861770 (-) True rab1aa
XM_043224150.1 mRNA upstream 51123 26870294 ~ 26871984 (-) True pane1
TU10045 other downstream 483 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 483 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 385529 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 385529 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 667922 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 378734 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 422053 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 935611 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 935611 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1255477 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile