RNA id: XM_043246409.1


Basic Information

Item Value
RNA id XM_043246409.1
length 1318
RNA type mRNA
GC content 0.48
exon number 6
gene id clta
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7797156 ~ 7804962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGCACCTCCCCCACTGACATTGGAGCCTTCGACGAGGAAGACAGTAGGGTGATTTGTGTTTTCGGTTGTTCTCAGTCCAGAGATATTTAGCGAGCCATGGACGATTTTGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGCGTGGGGGCAGACGAGGACCCGGCGGCAGCGTTTCTGGCCCAGCAGGAGAGTGAAATCGCGGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGAAGTGCCTTCATCCCTGAACCAAGACCCCGACGGTGGAGCTTTGAATGGAGATCTGCACGGGGAGAGTAACGGTCCTTCAGACGTGTATGCAGCCATCTCCAGCGCTGATCGGTTGCAGGCAGAGCCCGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGCGAGAGGCTGGAGCAGCTTGATGCTAACTCCCGTAAGCAGGAGGCAGAGTGGAAGGAGAAAGCAAAGTTGGAGCTGGAGGAGTGGCACACCAGGCAGAATGAACAGCTGGAGAAGACCAAAGTCAACAACAGGGTGCTGGATGAGGATTTCTACAAACAACCCTTCGCTGATCTGATTGGTTATGTGGCGGCTGAGGAAGCCATGGTGTCGGAGCTGGACGAGAACAGTCCCGGCACGGAATGGGAGCGTGTGGCGCGCCTTTGCGATTTCAACCCTAAGTCGAGCAAGCAGGCCAAGGATGTCTCCCGCATGCGTTCAGTGCTCATCTCCCTCAAACAGGCCCCGCTCGTTCGCTAAACTCCGCCTCTGGAGTCCACAAAACCACAAATCCCAGCAAGCCATTGGGTTTCACGACATTGATCAATTCCTTTGTGGTCCCATCCCAATGGCTTTGAGCTCAAATtccatttatataaataatctgtattatattattacataatataatatgggtatgtttatatacatatattccatctataaatatatacatatatataacaatgttcagattgtttttatttttggtgtcTATTTTAAGGACCAAACTCCTTGTTCATTTTTCCATGTAGAGACAGTGTGTGGCATTGTGACACTATCAATCTATGCATTTCCCTCGTAAAATGTTTGGGAATACAGTACTAAACGTCTTGTGTATGTTGTATACAGATGGTGGATATTAGcccgtgcgtgtgtgtgtgtaactatGTACATAAAGACTGGTCCTCTACACTTCATTGTGAAATTATGGCACAAGTTGTTGAAGAACAGAGCTGTACCCCAGTGAACGTTGCCTCATGTTGTCCATTCTGTTTCAGTATgattaaacacatttgaaatgttaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2522 lncRNA upstream 89025 7706885 ~ 7708131 (+) True G1732
TU2478 lncRNA upstream 148532 7647889 ~ 7648624 (+) True G1698
TU2477 lncRNA upstream 168845 7624948 ~ 7628311 (+) True G1697
TU2489 lncRNA upstream 190656 7598267 ~ 7606500 (+) True G1706
TU2446 lncRNA upstream 215066 7513555 ~ 7582090 (+) True G1677
TU2548 lncRNA downstream 743 7805705 ~ 7806252 (+) True G1751
TU2549 lncRNA downstream 2389 7807351 ~ 7808014 (+) True G1752
TU2547 lncRNA downstream 3341 7808303 ~ 7809221 (+) True G1750
TU2550 lncRNA downstream 6021 7810983 ~ 7811354 (+) True G1753
TU2551 lncRNA downstream 7191 7812153 ~ 7813651 (+) True G1754
XM_043216834.1 mRNA upstream 596 7792648 ~ 7796560 (+) True nansa
XM_043240935.1 mRNA upstream 5114 7778698 ~ 7792042 (+) False gne
XM_043248903.1 mRNA downstream 13461 7818423 ~ 7821348 (+) False c1h4orf33
XM_043248893.1 mRNA downstream 13771 7818733 ~ 7821348 (+) True c1h4orf33
XM_043247758.1 mRNA downstream 161729 7966691 ~ 7985139 (+) True pcdh10a
XM_043247750.1 mRNA downstream 161729 7966691 ~ 7982812 (+) False pcdh10a
XM_043247764.1 mRNA downstream 161730 7966692 ~ 7985139 (+) False pcdh10a
TU2530 other upstream 75731 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 644936 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 938588 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 951608 6711635 ~ 6845548 (+) True G1447
unassigned_transcript_2 other downstream 657417 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 658310 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 801866 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 895478 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 966146 8771108 ~ 8778892 (+) False LOC122342651

Expression Profile