RNA id: XM_043246511.1


Basic Information

Item Value
RNA id XM_043246511.1
length 1480
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122350179
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30319081 ~ 30321983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACATGTGTCTTCTGTTTCTTTGCCGCACTGCCTGAATTAGTTGCATGTATGAGTTCTAGACTGCAGAAGAAGCGAGGATCAACACTGTAGATGTGCTTAGAACGTCACAGCGGAAGCTTAGTAGAGATTTGATGTACGATTTTACAGAGAAAAAAGCCCAGCCTCGCATCTCATTTCCCTCTACTAGAGGATGTAATATATGCTCTGGCTGTGAAGGCATGTTTTCTCTCTGTGCTTAAGAGTATTTGAATTTCCTGAGTTTAACAGCTGAACTTCGGAGAAATATGCAGCTTTGGACTGAGCTCTGATCCTCTCTGAAAGCTTAATTAAATGACACAGTATTACAAGTTAAACTGAGCTTTACGTGAACTTGCCAATCTCACAGTTGAAAAGATCAAAGAGGAGTCAAGGAGAGTACAGCGAAAGATACGGCTGAGTGACTTCTCACTTCTGGATTTCTGTCTTCAATATCTCTAATGGTACATAATGAGTTTCTAAACCTTTCACCGGAATACAGAGCCACGTCACAAGACGAAGAGCCTGAAGAAGACCTCAGAATGCTGTTTTACTTGCAGGGGTTTTGCTCTTAGTTCTGCACACCTTGAATTACGACGATGGCCTCATCATCTGTTGGACGCCGctcatatattttttagaagCATTAGACTGtactttataataactacaaCACCAGAGACGGAAGAATGAATGGGTTGGCAGAGACCTCAGTGAAATGCGTACTGGTCGGAGACTGTGCAGTGGAAACTGCGCTTCTTGTACGATTCACTTCTGAAACGTTCCCGGACAGCTACAGACCGACTGTGTACGAGAACACTGGCGTCGACGTTTTCATGGATGGAATCCAGATCAGCTTGGGATTGTGGGATACGGCAGGACATGATACGTTCCGCCAAATCCGGCCCATGTCCTATCAGCAGGCCGACGTGGTTTTGCTGTGTTACTCTGTGGCGAATCCAAATTCGTTAAACAATTTGCGGCAAAAATGGATCGCTGAAGTGAGGGAATTTCTCCCGAAAGTACCTGTGCTGGTCGTCGCCACACAGACGGACCATCGCGAAATGGGCCCTTATCGTGCTAACTGCACCACGGCCTCCGAGGGCAAGCAGGTGGCACAGGAGATCCGTGCCAAGGGATATCTGGAATGCTCTGCTCTCAGCAATCGTGGCGTGCAACAGGTTTTCGAGTGTGCCGTTCGGACGGCTGTTAATCGGGCACGAAGACGGAGGAGGAGACTGATGGACCTTAACCCCTGTAAAATCTCCTGATGATTTTAAGAGAGGGATGGTGTTAATTCTCATCACTAAGACAGAATTGTTTCTCTCACGAAACCAAGTATTTGAAGCCTCAACAAAGACTTCTCAACACTGATGTCTAAAAATGGTTTACTTAACTGTTATACTGTCTGCTAGTTCTGACTATGTATTAGACACGTTACAGACATTGATCAGGTATTTATTC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11674 lncRNA downstream 28044 30290710 ~ 30291037 (-) True G7824
TU11672 lncRNA downstream 34731 30283969 ~ 30284350 (-) True G7822
TU11667 lncRNA downstream 75757 30195990 ~ 30243324 (-) True G7817
TU11654 lncRNA downstream 134472 30176165 ~ 30184609 (-) False G7806
TU11663 lncRNA downstream 141133 30169979 ~ 30177948 (-) True G7813
TU11724 lncRNA upstream 141340 30463323 ~ 30523613 (-) True G7864
TU11725 lncRNA upstream 141340 30463323 ~ 30504689 (-) False G7864
TU11727 lncRNA upstream 237267 30559250 ~ 30559552 (-) True G7866
TU11736 lncRNA upstream 334473 30656456 ~ 30661467 (-) True G7874
TU11932 lncRNA upstream 520995 30842978 ~ 30843402 (-) True G7988
XM_043247807.1 mRNA downstream 5030 30307963 ~ 30314051 (-) True LOC122350995
XM_043249230.1 mRNA downstream 153731 30155709 ~ 30165350 (-) True LOC122351861
XM_043249238.1 mRNA downstream 157168 30155709 ~ 30161913 (-) False LOC122351861
XM_043249248.1 mRNA downstream 157174 30155709 ~ 30161907 (-) False LOC122351861
XM_043245704.1 mRNA downstream 470701 29845625 ~ 29848380 (-) True LOC122349594
XM_043247390.1 mRNA upstream 1336 30323319 ~ 30324865 (-) True LOC122350704
XM_043245781.1 mRNA upstream 71925 30393908 ~ 30400631 (-) True LOC122349654
XM_043245788.1 mRNA upstream 79222 30401205 ~ 30424282 (-) True LOC122349663
XM_043239911.1 mRNA upstream 532053 30854036 ~ 30861383 (-) False gyg2
XM_043239904.1 mRNA upstream 532053 30854036 ~ 30861381 (-) True gyg2
TU11666 other downstream 121233 30192201 ~ 30197848 (-) True G7816
TU11380 other downstream 842743 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 843693 29467125 ~ 29475388 (-) False G7655
TU11360 other downstream 845520 29468294 ~ 29473561 (-) False G7648
TU11370 other downstream 847282 29464253 ~ 29471799 (-) False G7648
unassigned_transcript_161 other upstream 36096 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 36412 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 37837 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 38623 30360606 ~ 30360678 (-) True trnaq-uug_10
unassigned_transcript_165 other upstream 38939 30360922 ~ 30360994 (-) True trnar-ucg_103

Expression Profile