RNA id: XM_043246520.1


Basic Information

Item Value
RNA id XM_043246520.1
length 883
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122350202
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28218282 ~ 28220347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAATATGCGAGGActttaaagaagaagaagaagaagttccACAGTTCTCACTGATTTTCTCCGGTCCTAGGTGTTACATGTGATACCTCTTTAaaagcgcgcgcgcgcgcacacacacacacacacattttacatacatacatacacacacacacacacacacaatgaggCGGGGACATTTTGTAATCTAAAGGAAAAGGCAGAATGCGCGAAAGCGAAACGATCCGAAGCGAGGAAACAGGAAGACGTTTAACTATCCACAGTGATACCAAATGGCTGCAGTGATTTTTGACGTACTTTCTGAGCTGCTGGATGCGGAGTTTAAAGAGTTCAAGTGGCGTCTGTCAGACCATGGGACACTGGACAGCTCAAGTATTGCTCGTGGAAAGCTGGAGCACGCTAATCGCCACGAGGTCGTGGATCTCATAGTGCAGCAGTACACTGGCTCAGACGCCGGGAGGATTGCTATCAGAGCGCTGCGCCAAATCAAGCAAAATGAGCTCGCTGATCAACTGAAAGCAAAGCTTCAGGAAGTTTCAGAGGAGGGTTCTGCTGAAGATGGAGCTTCATCCGGTGCAGCGGCTGCAAACACTTCAAGGACAGGGGTTACGATGAACATACAAGCCTCCGATGGAGGGAACGTAAATGCCCCTGTTCTTCAGAACGGTGTTTATCACGGCTCAGTGACATTCAATTAACGCTCAAGGAGCTATCTGTCTTATAACAATGATTTTAAGGGCTCAAATGAAGATACAGCACAGAGAAAGTCtacagtttttgaatccatATTATGTTTGACAGCAAATTATATGCcttaaatatgatataattaaaatatgcctTTATCtcagaattaaataaatctacTTCTCATAAAGAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10557 lncRNA downstream 103355 28109682 ~ 28114927 (-) True G7182
TU10548 lncRNA downstream 143976 28073917 ~ 28074306 (-) False LOC122349330
TU10453 lncRNA downstream 216803 27960574 ~ 28001479 (-) False G7125
TU10524 lncRNA downstream 253648 27961915 ~ 27964634 (-) True G7157
TU10523 lncRNA downstream 260283 27956825 ~ 27957999 (-) True G7156
TU10636 lncRNA upstream 1909 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 18509 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 44050 28264397 ~ 28285334 (-) True G7480
TU11054 lncRNA upstream 88557 28308904 ~ 28803891 (-) True G7491
TU11059 lncRNA upstream 90777 28311124 ~ 28747639 (-) True G7492
XM_043242487.1 mRNA downstream 25519 28191706 ~ 28192763 (-) True LOC122347302
XM_043242481.1 mRNA downstream 30344 28186723 ~ 28187938 (-) True LOC122347290
XM_043245336.1 mRNA downstream 141637 28066047 ~ 28076645 (-) True LOC122349330
XM_043250471.1 mRNA downstream 156192 28057106 ~ 28062090 (-) True LOC122352802
XM_043245320.1 mRNA downstream 165782 28050085 ~ 28052500 (-) True LOC122349325
XM_043249779.1 mRNA upstream 552 28220899 ~ 28223247 (-) True nxnl1
XM_043245377.1 mRNA upstream 51222 28271569 ~ 28273549 (-) True LOC122349362
XM_043261700.1 mRNA upstream 53371 28273718 ~ 28278609 (-) True LOC122360767
XM_043261654.1 mRNA upstream 53371 28273718 ~ 28277635 (-) False LOC122360767
XM_043260931.1 mRNA upstream 94119 28314466 ~ 28320962 (-) True LOC122360275
TU10496 other downstream 141838 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 278830 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 278830 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 963215 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 1015715 27197905 ~ 27202567 (-) False LOC122344379
TU11020 other upstream 23781 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 170692 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 185835 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 303358 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 829396 29049743 ~ 29128775 (-) False G7563

Expression Profile