RNA id: XM_043246624.1


Basic Information

Item Value
RNA id XM_043246624.1
length 2396
RNA type mRNA
GC content 0.48
exon number 11
gene id brat1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7533249 ~ 7540360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCGTGCCTCTTGGACTTCATTTCCACTGTTTGCACGTCTAAAACTACAGATCCCGCCGTCCTGTCTTTCACCCTCAAACTGACTGGACTTCTGGCCTCCACAAAGCAGGGCTTCCATTTGCTTGAGGGTTTTCCAATAACATCCGGTTTTTGTGTTGTCTGTTTATGGAGATCAGGAGGGAGGTCTTTTGGCGTGTGCGTTTGACCGGGAAGTCTGGGGTGTGTGTGATCTCTGGCAGGATGCCTTGGTTCGCAGTGGCTGGATGCAGGGACTGTTGAGCATGTTGAAACACCAGCAAGCCTTGGACTTCATGTGTGGAAATGGACGCATCAAACTGATTCTCCAGCTGCAGAATGACAGGAGTCTGTTTGTTGCCTGTTTGGCTAATCAGCTTTTAGTGCATATCCTACATTTCCTCACCTCATCAAACGTGACCGACGGCAGTGACGTTGTGACATCAAGTGAATCGTCTTTGAGGCCTGATTGCGTCTCGGTCTCCTCTGAGATTATGAGTGCTGTGGTTGAGGCGTTGAGCTCAGAGGAGCATCCTAAGGTCCTCCAGGGCTTACGGCTTCTGTCACTGGTTGTGGCTCAGTGTGGAGAGCCTATCAGAAGCACgctgtggaaagatgtgcttgTACCCCTGGAAGTCTTGGTCAACAGGGGAtctgaatcattgattcacaCTTTGATAACTGTTCTAGAAGCTGCTGTGAGGACGCCTCTGCTCAGCCAATTGGAGTATAAAGTGGAGGAGTTATTAGAAGCCATGTTGAGTGATGGAAACAGAAAAGATTGTTTTCAGTGTGCGGCACTAATTGTAAAGCTGGAGAAATGTCCTGAGGTTGTAAAGAGGAAGGCTACGGATATCATCTTGCTTCCCCTGCAGTGTGTGTCAACACAGCCTCAagcaaaaaaggaaattaatgtAGTCCTGAAGGAACAGCTATCCCAGAAAGCCTCATGTATTTCCCTCCTCATGCAGAGTTTATCAAGCCTAGCACAGCTGGCGCACACAAAATACTTCTGCGGAGATGCTTCCATTCAGTCGATCACCAGCTCTGTGGTGTTGCTTCTGAGGATGTGCTCTGGGCATTGCCCCTCCTCTTTGCTACATATTAATTCCTTTACCCACCTGATTGGCTGTTGCAAGGTTCAGAGGTGTGGCCTGGATACATTAGGTGCGCTCAGTGTGTATGAAGaAAACCTGGATTTAAGTAAGGACATTTTTGCTCTCCTCTTGGACTATTTACAGAGGCCAGATTCCCATGCCACAgtcttgaagaaaacatttcaggCCATGAAGAAGTGGATTGTGTTTTCGGTTTTGCCTGATCTCCAGCAGTTTATCAGCCGTGACCTCTTTCCTGTATTGGAGAAACGCATGTGTGATGTGCGATGGGAAGTGAGAGACTCCACACTAGAGTTCATCACCCAGCTGACTGCTGCCTTTAACGGCAACAGTGATTTCACTGAAGCTCTCCACAGCAGCGGTATGGTCTCTGTTCTCCTTTCTTCACTGGCAGATGCAGAAGGCTATGTCAGAGCTAGTGCTGTGGCTGCTGTCGGGCAGGCAGTGCTTGTGAGCAATAGCACACTTCTGGAGGAGGCTTTGGTGCAGATGATGGCCATTCTCTCTCAGGACACAGAGGGCTTCCCTCGTAGAGCAGTGGTCCAAGCTTTCACATCATGGCTGAAAGGATCACACCTCTTAACGGCATTGGAGTCGTCCCTGAGCTCCGTCCTGTCACTGGGAGGCAATGATTTTGACTGGGAAGTGAAAATGCACACACTGGAGCTAGCAGAAGTGTTGATGGAGAAGACACTGACCTGCTGTCCGTACGCAGTCCAGGACTTCGGCTCCTCTGAGGATACACGCTTTACGCAAGCCTTGATGAAGTTTAAAGATTTTGGCCTGTTTGAGTTGCTGTTTAACAGCTTGTTTGACTGCGACAGACCAGTGTGTGAGAGAGCCTGTGCACTGTTGGTCAAACTCAGAACACTTACGGCCGAGTCTGCAGATTTGGATCACAGCGCTCTTGTTTTAAACGTATGTGGGAACAGATGGGGGGATGAGGTGCAGAAAAGATACCTCAAAGCATCTGCGTGCGTCACAAATGGAGTTACAGGATCTGATGAGGGAACCGACTGTAGTCTACACTGCACCAGAGGCATTAGCCTACCCAAGATACTACAGATTCTAGACCTAGATGACATGCAGAGGATGTTGACGTTAAGTAGTGATCATGTTGTGAATTCACCCAGATCGCTAATGGAGGACATTCTTTCAGCAGCCCAGCAGAGTGAAGAGAATATAGTGGATTGTTACTGAGAATATACTGTAACAGTTTGAGACCTTTTACAGCAGTTTAATAAAGGAAGATATAGTCTCAA

Function

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428 lncRNA downstream 216931 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 220351 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 235104 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 363227 7167577 ~ 7170022 (-) True G1642
TU2398 lncRNA downstream 368528 7162323 ~ 7164721 (-) False G1642
TU2585 lncRNA upstream 116317 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 203734 7743495 ~ 7797446 (-) True G1809
TU2672 lncRNA upstream 413452 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 441010 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 535414 8075175 ~ 8077330 (-) False LOC122341751
XM_043244069.1 mRNA downstream 3836 7527085 ~ 7529413 (-) True LOC122348313
XM_043220344.1 mRNA downstream 47592 7318338 ~ 7485657 (-) False sdk1b
XM_043234143.1 mRNA upstream 33967 7573728 ~ 7577469 (-) True zmp:0000001069
XM_043244596.1 mRNA upstream 39179 7578940 ~ 7607067 (-) True ttyh3b
XM_043250313.1 mRNA upstream 67878 7607639 ~ 7616300 (-) True iqce
XM_043250304.1 mRNA upstream 67878 7607639 ~ 7616294 (-) False iqce
XM_043240125.1 mRNA upstream 84345 7624106 ~ 7648594 (-) False grk4
XR_006250550.1 other downstream 237570 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 237616 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 363828 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 405842 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 991866 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 1063539 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1239457 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1255310 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2859426 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 3202161 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile