RNA id: XM_043246632.1


Basic Information

Item Value
RNA id XM_043246632.1
length 2109
RNA type mRNA
GC content 0.53
exon number 21
gene id klhl2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12236205 ~ 12246905 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGctcgtgtttttgtttgtcGCCGAAGGAGCGTGTCAGTCTTTCCTTCactcttgtttttgtgtgtgagctGTGTCGTTTGAGTCTCTGGATGTGTCCTGTCCTCACCCACACAACGGACCTGTCTGCCGCTCGGTATCCGGTCGCGTCAGTCAAACCGACACCGACAGCGAGGCCGCGGTTCTCTTTTATATTCATCAGCGGAGCTGGACCCGCGCACCAGGACCCAGTCCAGCCCGGCTCGGCTCGGTTCGGTGGACGGGACACAGCGGGGATTTAAACGACAGAGCCCGACCAGAGATGGAGAAACGCAGACTGATGTGAACGGAACCAGCGCTATGGAGATACATCCACTATGCACTAAGCTTTGTCATCATAAAGCTGTGGAGCTGAaggatgatgtgtgtgagaaacagagTGCGGTCACCATCAATCCACGTCACATGAGGAAGGCTTTCCGGATCATGAATGAGCTccgcagTCAAAGTGTGTTATGTGATGTCACCATCATTGCGGAGGATGTGGAGATAGCTGCTCATCGAGTCGTCTTAGCGGCGGGGTGTCCGTACTTCCACGCTATGTTTACAGGAGAGATGACTGAGAGTCGTCAGAGGAAGGTCCGAATCAAAGAGATTGACGGCTGGACTCTGGGAATGCTGATCGACTATGTTTACACTGCTGAGATCCAAGTAACAGAGGAGAATGTGCaggTGCTTTTGCCGGCCGCTGGTCTGCTGCAGTTACAGGAAGTTAAAAAGGCCTGCTGCGAGTTTCTCATAACTCAGCTTCACCCAACCAACTGCCTCGGTATCCGCGCCTTCGCTGATTTGCACGCCTGCACGGAGCTGCTCAACCTCGCCAACACGTACGCAGAGCAACACTTCTCAGAGGTCGTGCAGAGTGAAGAGTTTCTCAATCTGGGCATGGAGCAAGTGTGCAGTCTCATAGCGAGCGACAAACTCACCATTCCATCAGAAGAAAAGGTGTTTGAGGCGGTCATAGCTTGGGTCACGCATGACAAAGATGTGCGTCAGGAACACATGGCTCATCTGATGGAACATGTTCGCTTGCCTCTTCTTTCCAGAGAATACCTCGTACAGagggtGGAGGAGGAAACGTTAGTGAAGAACAGCAGCGCCTGTAAAGACTACCTAATTGAAGCCATGAAGTACCACCTGCTGCCGGCCGAGCAGCGCACCTTGATGAAGACCATCCGCACCAGAGTGAGAACACCCATCAGCTACCCAAAGgtgatggtggtggtgggaCAGGCCCCTAAAGCCATCCGCAGTGTGGAGTGCTATGATTTTGAGGAGGAGAGATGGTTCCAAGTGGCAGAATTACCCTCCAGGCGATGTCGAGCAGgtgtggTGTACATGGGTGGTGTTGTGTATGCTGTTGGGGGTTTTAACGGGTCGTTACGAGTGAGGACGGTGGATGCATATGACCCCGTAAAAGACGAGTGGTGTTGCGTCAGTAGCATGCAGGACCGGAGGTCAACTCTAGGCTCCTCTGTCCTCAACGGCTTGCTTTATGCTGTTGGAGGGTTTGACGGCAGCACAGGTTTAGCTACTGTAGAGGCATACAACGCTAAGGCCAATGAGTGGTTCCACGTGAGTCCCATGAACACGCGACGAAGCAGTGTTGGAGTTGGCGTTGTTGGAGGGCTGCTTTATGCAGTCGGAGGCTATGATGGAGCAACCCGGCAGTGTTTGAGTACAGTTGAGGCCCACAACCCAAACACCAATGAATGGTCTTACACAGCAGAGATGGGAACCCGCTGTAGTGgtgcagGTGTCGGTGTGTTAAAGGGTCTCCTGTATGCAGTAGGAGGTCACGCCCCTTATGTTAGAAAGAGCTGTGAGGTTTACGACCCTGCCACTAACACATGGAAACAGGTGGCTGATATGAATATGTCAAGAAACGCAGgtgtgtgtgcGGTAAATAATCTGCTATATGTGATTGGTGGAGATGATGGCTCATGCAACCTGGCTTCAGTGGAGTTCTACAATCCAAACACTGATAAATGGACTCTGCTGCCCACCTGCATGAGCACAGGACGCAGCTACGCAGGTGTGACTGTCATTGATAAGCCTCTCTGAGCAGCT

Function

GO: NA

KEGG:

id description
K10443 KLHL2_3; kelch-like protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3987 lncRNA downstream 85489 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 137921 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 307209 11927551 ~ 11928996 (-) True G2742
TU3914 lncRNA downstream 326195 11849622 ~ 11910010 (-) False G2690
TU4090 lncRNA upstream 42924 12289829 ~ 12290106 (-) True G2826
TU4096 lncRNA upstream 88447 12335352 ~ 12336759 (-) True G2829
TU4112 lncRNA upstream 179308 12426213 ~ 12442443 (-) True G2837
TU4113 lncRNA upstream 180262 12427167 ~ 12443813 (-) False LOC122348535
TU4114 lncRNA upstream 189012 12435917 ~ 12441497 (-) True G2839
XM_043236922.1 mRNA downstream 11123 12211436 ~ 12225082 (-) True cpe
XM_043249903.1 mRNA downstream 40522 12161837 ~ 12195683 (-) True tll1
XM_043240943.1 mRNA downstream 118822 12097929 ~ 12117383 (-) True ugt8
XM_043250940.1 mRNA downstream 141311 11960370 ~ 12094894 (-) True ndst3
XM_043236389.1 mRNA downstream 309383 11923120 ~ 11926822 (-) True mettl14
XM_043236093.1 mRNA upstream 1590 12248495 ~ 12281828 (-) False rapgef2a
XM_043236102.1 mRNA upstream 1590 12248495 ~ 12281827 (-) False rapgef2a
XM_043236106.1 mRNA upstream 1590 12248495 ~ 12281827 (-) False rapgef2a
XM_043236088.1 mRNA upstream 1590 12248495 ~ 12281827 (-) False rapgef2a
XM_043236097.1 mRNA upstream 1590 12248495 ~ 12281827 (-) False rapgef2a
TU3761 other downstream 723372 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 737847 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1182264 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 1254839 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 1422130 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 94830 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 96544 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 657294 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 657294 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 907581 13154486 ~ 13159246 (-) False smim14

Expression Profile