RNA id: XM_043247558.1


Basic Information

Item Value
RNA id XM_043247558.1
length 5949
RNA type mRNA
GC content 0.41
exon number 26
gene id knl1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7299948 ~ 7311221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGTCACGTGTAAAGTCACGGAAAGTGCCGCGAGAAAGAGACGAGGCGGTTGAGTTCAAATTTTACGAAGAAAAAAGACAAGCAGCGAATGGAGGGaaattaagtttagatatAGTGTTCCTcgcttgtattttttttaagcttttgtgAGCTGTATCACTCAGATCAACTGAAGATGGAGCAGCTGAATTTAGGCAATGAGGCGGTAAAATCCTCAAAAAGAAGACTGTCTTcgATTTTAAAAGCTACTCGAACATCTATGAAAATACATGGAGCTGAGCAAGAAGAACAAAAGgAGGAAATTGTCAAGCCTGTTGAGAAGAAAAGGAATTCACGAAGAGTGAGTTTTGCCACAACAAATAATGTTCGAGTCTTTACCAATGATGCAAAGAGTGAATCTCCTGTTCTAGCATCTATTCAAAACACACAAGTTGGAGGAGACAGACCAAATGAAAAGATTCTGTGTTTTGTGGATGAGGGAAGTCACCAAATCAAAGGCCTAGATACATTGTTGAACACTCCTCTTTATCTGTCCCAGCATAAGGAGAATTTTTTCTCTGATCCAGTCTTGCAAGATGACTGTGTGGATAGAACAATGCTGCTCGGAGACGATACTGGATGCATGGATATTACTCAGAGTCACACAATTACAATTGATAAGGATTATGAAtttgaagaagaaacaaacccaaGTCAGAAGGGTTTGCCACATGAAGCAAAAGCAGAGAGGAAAAATGCTGCCAATGACTCAGACTTCAGTGCTTTTCTTGCCAGTATGAGCTTACCCACTGTAAATACCATTAAGCCCCACTCTTCAGAAAATCAGCTTGGTAATATCTTCTGTTCAGCCAATACAAGCACATCAGATGTTGATAAAGAGAATCACTTGCCAGTTAAGCAACATCCAGGTGGCAAGGGAAACCCGCAACAACCTCGAGGACTTCAGCGAAGGCGTTCTCGTATTGGAATTGTTGAAGAAAATGGTATAGAGACAACCAAGAGTCACACTGTTGTAACTGAAAACATAGGTAATGCTGAGCTGTTCACACCCTCTGTTTCTGTAAATCAAAGAGGTGTTTCATTCATGACATCTGCCTTTTCGAACATCCCAGATGACATGGAGCTCACTTTGAGCCAGACTGCTGCAATCAATGTTAAAGTTACAGGAAATATCATTTGTGATGTCCAGGCTCCTCTGGAGCACAATAGATCCCATAATTTCTCTGAGGACAGTGATACAATGGAAGTGACAAGGGCATTCAATGTTTCTGTTCGTGAAAAAGACTACACAATGAGCATGAAGGAGCAAGCTCAGTCTTCAGTTCCCACAGTAAGAAGGATGTCCTCCTTTAATATGATTGGAAATGCAGAGACAGCAGATCATAATAAAGCTGGTCATTTACAGACCAATTTCTCAATAGCCCAGACAACTAATTCCGATGATATGGAAATGACGGGAACATTTGATGTATCTGTTAGAGAAAAAGACACAACAAGTGAGCCAGCTCATCCTCCAGGTGCCAAAGTAAGCAAGATGTCTACTTTtgattcttttgaaaatgtagatATGGTGGATCGAAACAAATCTACGAACAACTTTATAGCTCCAACTGCTACTACTGACGATATGGAGATGACACAGTGCCATACTATTGTTCTCAATGACAAACAGACAAGTGAAAACCAGCAATTCAGCAACACAAGGAATAGTTTGCCTCTTGTACCTTTATCCAGATCTATTCGAGAAGATCAGCATACAGGCAATATGAAGAAGGACGTCCCGCATCCAGTTCCCAGAGTAAGCAAGATGCCCTGCTTTGATTTAGTTGGAGGAGGATTGATAATGAATCCCATCAAATCAGACCACCTCCCAATAGCCCAAATTGCAAATTCTGATGAGATGGAGATAACACAGTGTCAAACAATTTTTCTTGAGGCCGAGCAGGTCAATGGAGACAAGCCATTCAGCAACACAAGGAATAGTTTGCCCCTTGTGCCTTTATCCAGATCTGTTCGAGAAGATCGGCATACAGGCAATATCAAGAACGAAGCTCTGCATCCAGTTTCCAGAGTAAATAAGATGCCCTGCTTTGATTTAGTTGGAGAAGAATTGATAATGAATCCCATCAAATCAGACCACCTCTCAATAACCCAAACTGCAAATTCAGATGAGATGGAGATGACACAGTGTCAAACTATTTTTCTCGATGCCAAGCAGGTCAATGGAGACAAACCTTTAAACAACTCAAGAAAGAATTGGCCTGGTACATCGGTATCTGGACCTGATTGCAGTGATGGAATGGACATGACTCAAGCATTCACAGGGCGTATAATCCATAATGCTTTTCCAGCCTCCAAGAAGAAAAGAGGTCAAAGCATTCTGATGCCTGCTACAACTACATTAGCTCAACATAATGATAGTGACTGTATAGACTTCACATGCCAAACAAATACTTATGATAGTATTTCAACCCCAAGTCCTGATGAAATGGAATTGACCGGTTGCACCACTATTAATATTGATTCGAACCGTACCTGGCTAGGGAGTGCTGTGGACCTCACTGGTGCAAGAAGAGCAACATTCTCTGCTAATCAAACAATCACTATGGTTGAACCTATGGAGATGACTGAGGTACCCATGGCACCAGTTAGtgagcaaaaatataaagcttttATGTCTCAAAGAAAGTCAGGAGTAAGAATGATGCCCTTGGTGTGTGATCCTGAAAATACTGAAGCTGATAAGCGTCAGACTGATTTCTCCAACCATGATGACATGGACATGACACAATGCCAGACTGTTGTGCTTGAGGCTGAAAACTGCAAGAAGGCCAAACTATTCAGTAATTCCAGGAAGAGTCTGAACCTTGTATCTACATCCTTCAGTCCTGATGTTGACAGTATGGAGATAACCCAGGCACTCACTGGCAATATCGTGTTAAAAAGCTTTGCATCCAGAGAGGAAAGTAAGCATGAGAGAAATCTGTTGCCTGTAGCACAAAGTTGTCAAATACAGGATGAGTCTGACTGCATGGAAATGACATGTCAAGCCAGTGCATCAAATCTAGCTATTCCCTGTGTTGATGATGAAATGGAACTAACAGGATGCAACACGATTGCAATTGACTCAAAAAACACATTGGCAGCAAGTGCTACAGAGATCAAAGTGCATGACAGTGCACTTTGGGCGTCAACATCTGTTTCTAGATCCGCCGTGTCAAGTGAAGAACAAAATGTAGTGAGTGAACCTGCCAAGTGTGCTATTAACCACGTCTTCccctcaaaacacttttttgatCTTAAtggcaaaaacattaaatgcaacAACACAGAGACAATATCCTGTGGCCCAGCCATCATGCAATtggaaaaaaattgcaaaatggCACATCCAAGCAATGTGTTGACTGATGAAGACAGTGATATGCAAGTTACAAAGGTCCTTACAATGCCCATTGAAATTGAGCAGagtgtttcttttaatgaaGAAGCACAGATAAAGACTTTTTGTGGCTCTGGAAAAGAAGAGGGTCAAGCACCTTGGCCTAACAAGGAACAAAGTACAGGTTCAGTCCAACTTGAAGGTTCCTCCTCAAATGAGTCTGCAGTTGATTCCTTCATTATAGAAGAGCAGCAACATGCAAAAGCAAGACGAAGAAGTTTAGCTGACTTTCAAACGGAGCTTCGCAACATGTCAAGGCGTATCCAGGAAGAGCAAAATGTGATAACAGGAAGCACAACTGCACCTCTGCCTTCATGTTGCCTCCCTGAGAATTCCCTTAAAGAGCAGTGTGAAATTTCCAAAGAGCTAACTTCAAATGCCACACCTAAAgtcaagcaaataaataaatctgttcaTGAGAAGACCACACCTTTTAGTCTCAAAAAGACGGCATTTTCATCAAGGTTGTCTTTGTGTGGTATTGTACCAAAACTACCGAAACGAGCTACAACTGCAACTCCTAACAAAACTGTGACCATAAGTAGTTATGATTTACAGTCTCTTCAACTAGAGAAACATTTTGATGTTGCTGTAAAAAATGGCAACTGCGAAACAGTCAATATTAATGATGAAGAGTTCCCTGAAATGAGCAGCGAAGAAGACTTGTCCAAGAGTCTTGAAAATTGGCCAAATAACAAGGAAGATGAACTGGATGGTTCTTTGGTTGTACCCAAGTATGAAGAGCCTTTGGAGAATGAGGTGTTTGAAACAGACACAAGCGCTAGTCCTTGTTTTAAAAGGCCACATTCAGAGGAAGACTCTATTACAGCAGAACAAACCAAGAAAGTCTGTGTTTCTGACATGGGGCCTGACTGTCATGAAGCTGCCGTACAGTGGGAAGGTAATTTTACAAGGCATGCTGCTCAGAATCCCAGGGCAAAGACAATTGAAGATACAGGAGTGTCTGAATCCACTCTCAAATACTCACAGTTTGACTGCCATATGGATGGGACGCTGAATCAAGTATTTGATTTCAACAAGAAACTTGAGGACGGAAGCATCACAGTCAATGAATTCTTAAGCCACTTTGGCATCAACTTTGTTATCCACAGATCTAGACCAAGTGCTCTTCCTGACAGTTGTAGAGCTGGAGAGACACGTACCATGGAGGATTTGCTCAAAGAGAAATACATATACCACCCCAAGCAGAGAGCATATGAGCAAGACTGTAAGAATCTCACAGAGATGGTAGAAAGACTTAAAGAACAGATGCCTGAACAAGAGAAATCCCTGGGATGCATTAATGGAGCCCTTCAGCAAGAGTTATGTACTCTCTCTGAAGAGCaaTTAAAAAGCTTTGGCTCCAAGTTGAAAGAACGAAgagtttattttggaaaaagaaGCAAAGCACTTTCtcatgaaatgaaaagagacATTTACTCAGAGCTCATCAAAACGACACAGGATGCAAAACAGAGTCTGATATCTAAAATCAAAGAGACGAATGAAATGATTGAAGACTTGGATGGATGCATTAATGATTTAGAAACTGAACTTGCATCTGTAGAGGCCATGATTATGGGAGATCATCTTGACGCTCCTCAGACCAGACCAGCCTTAAAAGCTAAGGAAGAGGatTTGCAGAGACTTAACTCAGTTGTCACAGAAAAGGAGAGGGAAATTGGTGAGTTGGATATTCAGCTAAGGTCTTTGGAGAGCCAACAGGAGAAGCTGCAAGGGGAATCCAGTAGCCTTAAGAATCATCTTGCAACCTTGAACAGtttgAACGAGTGGCGTCTTGATGCGACAGATGAAAAGGGGGCTTTGTTTACCTTCCTTCACAAAACTGTACATCTGCAGGTGAACCTGCTAACACCTGCTGGAAAGGAATGGATGACTGAGGATGTGGAGCGAAATATAGATGTAAGCTTCCAGTTGCACCTGGATGtggaaaAGTCTGAGTCTCATGCAAGCATGGTCCACAAGTTACTTTCACTACACTATCATTTTCAAACTCAATGGACAAAGAGGTACCCAACAACCCAACATATACCAGAGCTGCTTCATGACATTAGTTTGGTGGTGGGCCGTCTCAGGCTCTTGGGCGAGGAGATTCATCGGCTGAAGAAGTGGGGACTGAAGCTCCGCATCTTGAAGATCAGCTGTTCAGACACACAAGTTCATGTCATCTTCTCAAGTCTGAAAGCGTTTGAAAAGTTTGAGTTAAGTCTGATGGTCACACCAGACTATCCCTTTGGGCCACTTCACATACAGGACTTCAAAAGTTATGTTGGGGATACAAGGTTGAGTCAAATCGAAGACATCATATCATCAGTCAAACCAGCCAAGAACTATCTGACAAAAGTCCTTAAGAACATTCATGATGACCTCCTGTGCTAAGATCCCAGGCCTCATTGTTTAATCTGTTCTTTACtgtcttttgtttgtgtatatattgatgtttttacataatcaaataaataattgaagaTGTAGCCAAAAACAA

Function

GO: NA

KEGG:

id description
K11542 CASC5, KNL1; protein CASC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250485.1 lncRNA downstream 1803 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 129926 7167577 ~ 7170022 (-) True G1642
TU2396 lncRNA downstream 135227 7162261 ~ 7164721 (-) False G1642
TU2398 lncRNA downstream 135227 7162323 ~ 7164721 (-) False G1642
TU2378 lncRNA downstream 147468 7150285 ~ 7152480 (-) True G1632
TU2425 lncRNA upstream 1034 7312252 ~ 7312898 (-) True G1660
TU2428 lncRNA upstream 4692 7315910 ~ 7316318 (-) True G1663
TU2585 lncRNA upstream 344860 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 432277 7743495 ~ 7797446 (-) True G1809
TU2672 lncRNA upstream 641995 7953213 ~ 7984303 (-) False G1845
XM_043236006.1 mRNA downstream 4119 7204004 ~ 7295829 (-) False dmd
XM_043236048.1 mRNA downstream 4262 7222031 ~ 7295686 (-) False dmd
XM_043236011.1 mRNA downstream 4310 7204004 ~ 7295638 (-) False dmd
XM_043236041.1 mRNA downstream 4314 7204004 ~ 7295634 (-) False dmd
XM_043236031.1 mRNA downstream 4315 7204004 ~ 7295633 (-) False dmd
XM_043220344.1 mRNA upstream 7120 7318338 ~ 7485657 (-) False sdk1b
XM_043261425.1 mRNA upstream 7120 7318338 ~ 7485657 (-) False sdk1b
XM_043253963.1 mRNA upstream 7120 7318338 ~ 7485657 (-) False sdk1b
XM_043246711.1 mRNA upstream 7120 7318338 ~ 7485657 (-) True sdk1b
XM_043244069.1 mRNA upstream 215867 7527085 ~ 7529413 (-) True LOC122348313
XR_006250550.1 other downstream 4269 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 4315 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 130527 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 172541 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 758565 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 1292082 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1468000 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1483853 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 3087969 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 3430704 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile