RNA id: XM_043247653.1


Basic Information

Item Value
RNA id XM_043247653.1
length 3581
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC122350806
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1334924 ~ 1346793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACGCACTGGAGTTCCTCCACCAGCCGCTCTGTCCTGGATGGCGATTTAGGGCGTTTTTCTGAAACGCGTACTGTTAAAGATACCAAAGAAAGGCGCGAAAGCTGTACTTTGtataaaaatgcgtttctcaatATACACTCAGTACATCATCTGCGGTGTGTTCCTCGTCGGAGGAGCTGTTTCAGgcGAAGAGGTGAAGAAAGCTGTGGGCGAAACGGTTTCTTTTCTTCCAGAAAATGTAAAGCCTCCTGTAACTATTACATGGAAACAGATAAGTGATTCTGGTACTGTTAAGGCGATTGAATGGGATAATGATGATCAGAAATATTATAAACCCCATCCGAGATTCAGTGACGCCACATCTCTCAATAAGGACACAGGAGCAATCACTATAGCTAATTTAAAACTGGAGCATAGTGGAACGTACATCATTGACATCAACAGTAAAGAGCAGAAGCAAAGATTCACCTTGAAAGTTATGGagcGGGTTCCCAGACCTGAGATAACTAAAGATAACAGCAATAATCCTGATGTggtgtatttaaaatgtgaatacaaTGAAATGATCATCTGGAATAATTCTACTGGAGTACTGGAGGATCAGAACAACAAGAAAGAAATCTCAGttaaaaaaacaggaaatgctGAAAACTTCTACACCTGCACATTCAAGAACGATGTGAGCGAAGAGACCAGTGATCGGATGTACGAGAGAGATCTGTTTGAAGATACTTctgatgaaaaccgggaggcgtGTGACCGTCCAAACAGTTATgactgtcaaggctcGAATGCAGGACTGGTCATTGGGATTATTGTGGCagtcatcctcatcctcatcatcatcggCCTCATTTGCGCCTATCTACTCAATGCGTCCTTTCACAACTGTGTTAATGATTGCTGTCCATTTCTAAAAAGTTTAGGCTGCTTGGAATGTTGCGCAAAATACAGAAAGCAATATAGTCCAGCGCCAGCAAAGGATGACGGAAAAACGGACGCTGAAGACGGCCAAGGAAACTCTTTGAAAGAGGTTTCGGTTCCCAACGGAGATGAGCCGAAAGAAGAAACAGCTAGCCCAGAATAATAACAGCTCTGCTTCACTGAAACAAGTCAGCAGAATTTGGTGGAGAGACCACAACAAAGACACAAAATGAGGATTTTTCTTTCTATTGGCTTACTGAATTGCTTCTACAATGACAGTCTGATTTTCAAAAACGGGCCGTGAGCTTTGCGCGAttgaaatcattatttattatctcAACCAAATATGGTTAGTTTTAAAAGTGATCCTTCATGAATCAGGCCTCAGTTTAATTGTTGGTGTTCACATtggtgattttatttgatttttttcccccctctccaATCTGATAGTCCACACTGTTATTTTCAGACCACACGTGTCGTTCGTGACTTTTTCAgcaatctattttttttctctgtcaaaGCATATTCTCGGCATTGCATTTTGACCAGATTTAGGCTAAATCCATGACAAAGGATTGACTTCCTGAAGCAGGCTGTGTGTTAAGGTAGTGCTGATCAGGTTTCCGTCCACAGTTGCGAAATTAACCGGTGCGCTTTACCGAAATATCGCGAATGGAGAAATGCTTACTTTTTCTCAGGCTTTTGAGAATAAGCGTAATTTCAGACGCTGTGGAATGAGCGCTTAGTCAGGATTTGCCGACCCATTGCTCAAAAGCATATTACTTTTTTGATGCGCTTGGAGAAATTAATTCGCGAAATGCATTTCCGCCGTGCATTATATGAAAAACCAACGTGTTTTTAGCAAATGAatggatttttaattaaacctgGACCGCTTTCATCGCTTGTTTTATCGTAAGATActtcaaaatgcacatttgagAGCGGCAGCCTCCAAACAGTATCATACTATCCACAAAACAGTGAGAAATGCACATCCCATGTAGGTCACATGACCGTGTCAACATGGCAGAAGAATAATATCCAAATTTCATTCATACTATATAAGACTATCTTTGAACTAAATTACAAATCAAATGTAGTACCTAATTATGCAATTTAGTGAAACCAACACTGGGGAGGCGAACGTGCCATCACACCATACTACATGTAGAATAACTAATTGAATGTGTTTAAGACGGCTAGGTGACATGAGACAGGAGTTATACTGATTCTCAGCGTCTAGATGGGGCCGTTTGTGACTGGATGTGAATAAGACTTGACTACTTAGTTTGTAGCATGCTCATTGTCACATGCCTTTTGTTCTGCTATCAGAGATCCTGATAGATGTATGAATTTGTAGATAGTAGAAACAAGTAGCACTTAGTGCAAACAGTGCGTGATTAGAAGTAAAAGGTTTGAAGCGTTTGCGCTTGGCGGGTGAACCTGCTCTTTGCTACTGAGAAACATTGCAATCTTTTTATTCAAAAGGAAATCaggaaaatgtctttttttaggTCATTCGTTGTAGTTTGTGCAAATGTCTCGTTTTCAGAAACACCCAGATATGAAAGCGATTCTGTAATTCTCATATTTCTCTTTCACCGTGAGTAGCATGCTGTATTTCATTCCGGTGTTTTAAACTAATATAAAGCCATGTCTCTGcgatgaaaaacacattttagggcCTCAGCTTCTTATGAGAAATGAGAAACTccctcatttcttttttttttagcgtttAAGGGTGCGGTTTCGATTCATTCATACTTCACTGATCTTGTCAtagtttcatttttgatttgtaCAGTATCTTcttaattttgtatattatccCTGCGGTATGTAATCTTTTTCTAGTGTAaccttcagttttttttttcttttgttgtggttggtatttttttcctttttatataatacaggCAACATTTATGTATGTCTTTTAATGCCGGTTATGATGGATCACATTGTCTATGACTGGATATTACTAACCTCATTCACCAGTATCTAAAAGTGCACCAGTAACTAATAACATTGATCCCGAGGAGCTTTTGGGAAATGTCTTTCCCATAGGCTGCAGATGTCGCTTTGCGGTCTTtgcaaaatgcataatttcCTTTTTGTATTCACAGAcctgtatttgaatatataaaaaatgtgtgagCTTTATCCCAAAGTGGTTCTGaatgtttgtttctgtgtgtttcgtATTTTAAGGAACTGCAGAGAAACACTTGCCTGGTAACTGTTGCTTAAATAGGGATTAAAATAGAATTGAGGAAACTGTTTGCTCATCATATTGCTCTGTGACAATGAAATTGAATATGTGAACTCCTGAACACTGCCTCTGCTCTTTGCGTCATGAAGATGGCTTTTAACAGATCTTGTATTTAGCAGTGgctgttacatttatttcacttatttagtaatttattcaCTACATTCTTTCAGTGTATTTAGAAAGAATGCGGCCTAAATGCATTTgccattgtttttattgtttgttttttttgtgcaaatgtaaagtaaatccctcaatcaatttttttaatattatacaattgCAGTGTCTGACGGCCATGAAATCCTGAAATGTGTATTAAGTTTGAATAAAGTTGCCATTTCAGAAATATTGGCAAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296 lncRNA upstream 1536 1329595 ~ 1336345 (+) True G207
TU245 lncRNA upstream 119147 1218065 ~ 1218734 (+) True G175
TU193 lncRNA upstream 125738 1166508 ~ 1212143 (+) False G138
TU194 lncRNA upstream 167209 1126766 ~ 1170672 (+) True G138
TU196 lncRNA upstream 186712 1148386 ~ 1151169 (+) True G139
XR_006251676.1 lncRNA downstream 11041 1357834 ~ 1402615 (+) True LOC122350990
TU306 lncRNA downstream 36960 1383753 ~ 1384030 (+) True G217
TU288 lncRNA downstream 50106 1396899 ~ 1398974 (+) True G203
TU321 lncRNA downstream 120692 1467485 ~ 1468131 (+) True G227
TU396 lncRNA downstream 138353 1485146 ~ 1485643 (+) True G270
XM_043248864.1 mRNA upstream 6332 1328385 ~ 1331549 (+) True LOC122351641
XM_043242789.1 mRNA upstream 75913 1260177 ~ 1261968 (+) False LOC122347468
XM_043242780.1 mRNA upstream 76024 1246693 ~ 1261857 (+) True LOC122347468
XM_043242803.1 mRNA upstream 87547 1245163 ~ 1250334 (+) True LOC122347479
XM_043222498.1 mRNA downstream 92247 1439040 ~ 1441471 (+) False LOC122327253
XM_043222583.1 mRNA downstream 92247 1439040 ~ 1441471 (+) False LOC122327253
XM_043244881.1 mRNA downstream 109293 1456086 ~ 1465285 (+) True LOC122348945
XM_043244943.1 mRNA downstream 114431 1461224 ~ 1465285 (+) False LOC122348945
XM_043245929.1 mRNA downstream 178314 1525107 ~ 1570888 (+) False runx1
TU190 other upstream 217160 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1159681 177716 ~ 178200 (+) True G10
TU309 other downstream 92280 1439073 ~ 1441439 (+) False LOC122327253
TU310 other downstream 92280 1439073 ~ 1441439 (+) False LOC122327253
TU311 other downstream 92280 1439073 ~ 1441666 (+) True LOC122327253
TU616 other downstream 839066 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 1136880 2483673 ~ 2485988 (+) False grtp1a

Expression Profile