RNA id: XM_043247807.1


Basic Information

Item Value
RNA id XM_043247807.1
length 2191
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122350995
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30307963 ~ 30314051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAGATCGTATTTCTTGTGGTTcacattagcatgttgctacaTGTTGTTTTTTCTGCTCAGGGTCACTTTGCTAAAAAACTGCTGAATGACCTAATGGACGACTATTCTAATGCTTTACGGCCCGTGGAAGACACAGACAAAGCCCTTAACGTCACTCTACAGATCACACTCTCACAGATTAAAGATATGGATGAAAGGAACCAGGTGTTGACCACATACCTGTGGGTGCGTCAGATCTGGCATGATGCTTATCTGCACTGGGATAAAGATGAGTACGATGGACTTGAGGTCATTAGAATACCCAGCAATCTTATTTGGAGACCAGACATCGTTCTGTATAACAAtgcGGATGAGGAGGACTCTTCCGGACCCCCAGACACGAATGTGGTGTTGAGGTATAATGGTGAGATCACTTGGGACTCCCCTGCCATCACTAAGAGTTCCTGTAAGGTGGATGTCTCTTATTTCCCCTTTGATAGCCAGGAGTGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAGGTGGATATCAGCATGGGCATGGAGAGTGGTGACCTTTCAGACTTTGTAGAAAATGTGGAATGGGAGTGTCACGGCATGCCAGCTGTTAAGAACGTCATAATATATGGCTGCTGCTCTGACCCATACCCTGATATAACGTACACAGTCCTGCTCAAGCGGCGTTCATCCTTCTACATCTTCAACCTTCTTCTGCCGTGTTTCCTCATCTCTTTCCTGGCTCCACTGGGCTTCTACCTGCCTGCTGATTCTGGGGAGAAGGTCTCACTTGGGGTGACAGTTCTGCTGGCTCTGACTGTATTTCAGTTGATGGTGGCCGAGAGTATGCCACCTTCAGAAAGTGTTCCCCTGATTGGAAAATACTACATTGCAACAATGACCATGATATTGGCCTCTACTTCATTGACTATCTTTATCATGAATATACACTTCTGTGGAGCAGAAGCCAAACCTGTGCCCCACTGGGCCAAAGTCCTGATAATAGACTACATGTCGAAGATCTTCTTTGTGTATGAGGTAGGGGAGAACTGTACAACACCTGAAAGTGACCGAGGCACATTATTCTCGGAAGACCCACTGGCTAGCCTTGAGAGAGATGGGTATTTTGACAAAGGGTTTTATGGCGACCATGATGACAGAAACCGCAATCAGTTTAATGGGTACAATCACAGAGACCACCGGCATGGGAATGGGTACCATCACAACAGCAGAGACTATCGACAACAGAGGCATAACCAGCAAAGAAGGACACGCTCGTCTTCCAACTCGCCTATTCGACAGAATGCCCATCAtccaaaatacacacattacattGGCCGAGATGGAAGTGAAAAGCTTCCATTGACAAGCCAGGAGAAACTCAAAGACAGCGAACTCTCCATTCCAGAAAAACTTACTGGATACACCTACGATCATGGCAATGGTTATCTAAATGGAGTTGGGTATCTCCACGATAATAGCTACAGCAAAACCTTTGGAGCAGATAGTTATAATAAGCCCACCACTGGCAAAGgatgtgtatgtgtctgtggcCAACATCAGAAAGTGGTGCGAAACATTGAGTACATAGCTAACTGTTTCAGAGAGCAGAGGGCACACCAGGCCAAAGGGGCTGAGTGGAAGAAGGTTGCCAAGGTGATGGACAGGTTCTTCATGTGGGTGTTTTTCATCATGGTCTTCCTCATGAGTATCCTTGTCATGGCCAAGGCAACCTAGACCGTTTACACCATAAAGATGTAATCAACTGATATTTCATATTGGCTAACACTATGTGTCAAAAGACCAGTTAGTTACTGataaatttttttcatcttgTATTTGTTGGCAAATGCGCTAATGTTCTACATTCAACTTAATATGTGGGTTACTGCAAGAGAATTAGTTGTTTGAATGtctcattttctttattgttgGTTTCATTCTTTACATTCAAGAAGATTCTCTGGTTGTAACAGTTAAAGaaacagcattaatattttaggtGTAGACGTGTTCCCACATGTGTATATAGAGTAACACAATCTTTGTCTGGCATGGacaaacattaataatgcaCAGTTAACCCTGCACATGCGCATTGACAGACATCCACactaatgcacattaaaaatgcataaatagatCAGTCTTGAATGTtgatcacacacacagtgtaaaaCTTGCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11674 lncRNA downstream 16926 30290710 ~ 30291037 (-) True G7824
TU11672 lncRNA downstream 23613 30283969 ~ 30284350 (-) True G7822
TU11667 lncRNA downstream 64639 30195990 ~ 30243324 (-) True G7817
TU11654 lncRNA downstream 123354 30176165 ~ 30184609 (-) False G7806
TU11663 lncRNA downstream 130015 30169979 ~ 30177948 (-) True G7813
TU11724 lncRNA upstream 149272 30463323 ~ 30523613 (-) True G7864
TU11725 lncRNA upstream 149272 30463323 ~ 30504689 (-) False G7864
TU11727 lncRNA upstream 245199 30559250 ~ 30559552 (-) True G7866
TU11736 lncRNA upstream 342405 30656456 ~ 30661467 (-) True G7874
TU11932 lncRNA upstream 528927 30842978 ~ 30843402 (-) True G7988
XM_043249230.1 mRNA downstream 142613 30155709 ~ 30165350 (-) True LOC122351861
XM_043249238.1 mRNA downstream 146050 30155709 ~ 30161913 (-) False LOC122351861
XM_043249248.1 mRNA downstream 146056 30155709 ~ 30161907 (-) False LOC122351861
XM_043245704.1 mRNA downstream 459583 29845625 ~ 29848380 (-) True LOC122349594
XM_043257071.1 mRNA downstream 475883 29822257 ~ 29832080 (-) False LOC122357555
XM_043246511.1 mRNA upstream 5030 30319081 ~ 30321983 (-) True LOC122350179
XM_043247390.1 mRNA upstream 9268 30323319 ~ 30324865 (-) True LOC122350704
XM_043245781.1 mRNA upstream 79857 30393908 ~ 30400631 (-) True LOC122349654
XM_043245788.1 mRNA upstream 87154 30401205 ~ 30424282 (-) True LOC122349663
XM_043239911.1 mRNA upstream 539985 30854036 ~ 30861383 (-) False gyg2
TU11666 other downstream 110115 30192201 ~ 30197848 (-) True G7816
TU11380 other downstream 831625 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 832575 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 834402 29457515 ~ 29473561 (-) False G7648
unassigned_transcript_161 other upstream 44028 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 44344 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 45769 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 46555 30360606 ~ 30360678 (-) True trnaq-uug_10
unassigned_transcript_165 other upstream 46871 30360922 ~ 30360994 (-) True trnar-ucg_103

Expression Profile