RNA id: XM_043247991.1


Basic Information

Item Value
RNA id XM_043247991.1
length 4096
RNA type mRNA
GC content 0.43
exon number 3
gene id npy1r
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12292229 ~ 12308709 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAATCTCCCTCGATACGGTGGATGTTGTTCCGCGCGTAAAGACGCGGTACGCTATAGCGCGTTTCGGCTTCGAGCGTGGAGAAATGTGGGATGCGTAGGTTTTGCTCATTTCACAAtgtgttataaaaaataaactttacgCGCCCAGACGCGCGTTGCCGAGCGCAGCTGGTGGGCAAGAAGAAACTGATCATTACGTTATAAGGACTAAAGCGCCTGCAGGACTTTGACCTGTTTGCTGTACACTAGATGAAAGCACTTAACTCGGGAGTTTGGAGCCTAATAACGCTCAATAATTGAACTAAAGGCTATCATCGAAACTGTCCCTCCCGGGAACGAGAGGACGGTCAGGAGATGTTCTCTTCGGACGCGCTTATCTTTCTCTTTAGGATGTAATGGCACATTTCAGATTGTTGAGAGGAGACATTAAGTGTGTTGtcagaattactaaaacatgttCATGGAAAGATTGTTACCTGGAAGGAAGGAGTCTATGATCACTTGATATAAACCAACACCAACTAACTGCGGAGGAGGCGGAACAATGCCAGACTCCGCCTTCTCTCCACCAGTTCCACCAATCACTGCTCTGAACTGTTCCTTGGACATATCGAATTGCTCTTTCGCTAACCTCTCCACAATCTCATATGGCGACGAGTGCTACGGCAGCCACTCTTTGTTTGTTGTGATGGCCATTGCCTACAGTGCTGTGGTACTTTTGGGGGTCGTCGGCAACCTGGCTCTCATCCTTGTCATCGCACGGCAGCGGGAACTTCACAACGTCACAAACGTCCTAATCGCAAACCTCTCTGTTTCGGACCTGCTGATGTCCCTAGTGTGTCTGCCGTTCACCTTCATCTACACCTTCATGGACCACTGGGTGTTCGGCGCAGTCATGTGTAAACTCAACAGCCTGGTCCAGTGCTGCTCCGTCTCGGTGTCCATCTTCTCTCTGGTTCTGATCGCCATTGAGAGGCACCAGCTCATCCTGCACCCTCGCGGATGGAGGCCGAGCTTGAACCACGCCTGTCTGGGCATCAGCCTCACCTGGGCCCTGGCCGCCCTCACCGCCACACCCTTTCTGTTGTTCTCCAGGGTGACAGACGCCCCGTTGAAGCAGCTGCCCTCGGTCTTTCAGGAGCAGTACAGGGGAAAGGTGGTGTGTGTGGAGGAGTGGCCCTCTAGAGAAATCAAGCTCACCTACACCACTGGCATGCTGGTGCTGCAGTACATCACTCCTCTCACCTTCATCTTCATCTGTTACTTGAAGATCTACACACGTCTGCAGCGGCGTAATAACATGATGGACAGGATCCGTGAAAACAAATACCGCAGCATTGAGACTAAACGGATCAACATCATGCTCTTTTCTATTGTGGTGGCATTCGCGGTTTGCTGGCTCCCGTTGAACGTCTTTAACGCCGTCATCGACTGGAACCACGAAGTGGCCATGAACTGTACCCACAATCTCCTGTTCTCGCTGTGTCACTTGACTGCGATGTGCTCTGTCTGCATAAACCCGGTGTTCTACGGGTTCCTAAACCGCAACTTCCAGCGTGACCTCCGGGCCTTTCGACTCTGCAAGATTGTGTCAGCGCGGGAGAACGAATATGACATGGTTGCAATGTCGACTATGCACACGGATGTGTCCAAGATGTCACTGAAAATTAGTAGCCTAGATCTCTAGTGCAGTTCTGTAAAGGATACTCGCGTCTGCGTTCTGAAAAATGCATCTCTTTAGAGCTAGTTCAAAAGTGTGCGTTTATAATAAGAGTGATTGTTAGCAGATGTGACCATTGATGCCGGGGCTGTTGCTGCAAATGTTTTCCGAAATGTAAAATTGTACGTCGAGCGAGGATGCTGAATGCATTTCTTGCAAACTTCCAGTGTCCCGCGTCAGTGAGGCCTCGTTGGTTCAGACGGGTGGACTGAGCTTTGATCACTAAGATGAAATCTTCCTGCTGCGTGTTTGACTTAGTACGaagaaagcagaaatgaaaatgaatgcaaagcCCAAGAGGTCACGAATTCAAAGAtggatttaaatgtataatgaatGTCAGATGCGACTTTTAAGAGGAACTCTGAACTGTTTCCGTGCTGGattaaattttttgtatttttctttagtgTTGAAACCAAAACTAAATTGATTTTCTTCTACTTACTTATTCCTTTGACAAACCAAGCCTGCGGGAAGTAAAAGCCTGTTTTTAAAAGGCATTCGCGTGGACTGCAATTTGCAAGTGACCTGACATTGTTCATTTTCAAAGAGACTTTGCGATTTCTGATGTCACGAGTGACAGGGACTGTTGGCGATGTGACAAAGCTGTGCAGAGCATCACGGCAACCTCCAGCCATTTAAATGCTGTCAGTGTGAACAAGGCTGTTGTGCTATTGCTCACAGTGGTTTATTTTAAACCAGGGTGTCCGGTCCTACTTCTTGAAggccagtgtcctgcagagtttagatctATACCAGAATTAAACCAGAATTAAAACACACCAGAACCGAACAATCGAGGTCTTTAGAAAGGATTGGGTAACCCttcttaaacagttttatttgtcTGCATTTTGTTACTTTAAATCTGTAtcagacacaaacaaacaaataggaATGTGTCAGTAtagtttaataaatgtacatctTCGGTGATGCATAATGATTGTAATTGATGCTTTGCTATTTCTAATTGACATTAATTACCTCTATTATGTAATGTGATGTACTATTGCTTATTGACAGATTTGTAgtatatttttgacatttagtccttcattaaaaatgttttgccaaTGTAATGCCTTTACCAGTTGTTTTATGCTGTTGTCAttgcagttttagtttttagagtGTCATAAATGTGTAGTAGTAAAATACATGTGATATTCACCCTCAGAAATGACTAAATGATAAATAGAAGGCCACCGAAGTGGTTATCAAGCTCCTCTATTTCTGAGCAGGCTATCATGTGCTGCTGTTGGGATTTTGCCAACATCAGTGATTGATCCGTTCTAAATTACCACAACAGCGTAATCACGAAAAGATCAACCCAGCACAAAAGAGTCCCAGATTACAAAGCAATGCAGTTATAGAGATTTGCTTTGGCGTGATTATGTTCGTGCGTGGTAGGTCACTGTGCTTTTTGTGTACAGAATGTTCCATACACTGTATACGTAATAACTGTTTCATTCgctgaagatattttttaatcttttcggatttcagatttctatttttccatgtttgttcattttagcctttttttgttgcaaaaagtACACTGTGTGTCTTAAATATAGAGCGCAATACTGAAAACACCTTTCAAACCATATTCTATATCCTACCATTAATTCTTTTATACAGTTTAAATTCgctttttttagtattattacttAGATTTTTATGTAGTTGCCATTAACATTTGCTGGTGCAAAGAAGTGAGCATAAATGCATCTCTTTAAAAGGAAGAAGCGTTTCTTGTTTACTTTCAGTGTTAGAGAAAGCTCTTTAACTTCCCACAAGAGCTTAGCGACACAGGGCCAGAATTGGAGCAACAAAAATATCACAACACAAGCAAACACGTttgacagatttatttatttatttattttgaagtgtaaGTGAGCGCCGATGCTCTTGCCGCCATTATAGGGAATCAAGGGGGAATAGTGTGCTGGGAAAATAACAagcgaaataattaaatatgtatttccaGAACCTGCTGTTTTCGTACTCAATATTCCAACTGTCTGTTATCCGTTCTTGTAATATTTGAAAGGAGCTGTACGGCGTTTTTTTACTTGAATGGAATATTTTTTAGCCAGTGTGGATATCCTGTGGACTCTGCAGTGATGTTCTACTTTTTATATTGCTCATATCATGCTTTCTCTATGGCAGTTTTTCATGATTTCTGTCATCGTCTCTTTGTTTGATTTAGACACATCGAGTCTAATAAGATGTTCCGCAGTGCGCAAAATCATCCATGTTTGCTTCACTGAGTGCAGTGATCTTTTCTCTCTGATAGGGAATTATACCTCTGACGCGACCTTTCTTTGTAGTATGacgaacaataaaaatataatgtaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
K04204 NPY1R; neuropeptide Y receptor type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4090 lncRNA downstream 2123 12289829 ~ 12290106 (-) True G2826
TU3987 lncRNA downstream 141513 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 193945 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 363233 11927551 ~ 11928996 (-) True G2742
TU3915 lncRNA downstream 382219 11855220 ~ 11910010 (-) True G2690
TU4096 lncRNA upstream 27011 12335352 ~ 12336759 (-) True G2829
TU4112 lncRNA upstream 117872 12426213 ~ 12442443 (-) True G2837
TU4113 lncRNA upstream 118826 12427167 ~ 12443813 (-) False LOC122348535
TU4114 lncRNA upstream 127576 12435917 ~ 12441497 (-) True G2839
XR_006251338.1 lncRNA upstream 134150 12442491 ~ 12443883 (-) True LOC122348535
XM_043236093.1 mRNA downstream 10401 12248495 ~ 12281828 (-) False rapgef2a
XM_043236102.1 mRNA downstream 10402 12248495 ~ 12281827 (-) False rapgef2a
XM_043236106.1 mRNA downstream 10402 12248495 ~ 12281827 (-) False rapgef2a
XM_043236088.1 mRNA downstream 10402 12248495 ~ 12281827 (-) False rapgef2a
XM_043236097.1 mRNA downstream 10402 12248495 ~ 12281827 (-) False rapgef2a
XM_043249205.1 mRNA upstream 3993 12312334 ~ 12317191 (-) True tmem144a
XM_043238053.1 mRNA upstream 29621 12337962 ~ 12366104 (-) True gria2a
XM_043238052.1 mRNA upstream 29621 12337962 ~ 12365995 (-) False gria2a
XM_043238056.1 mRNA upstream 29621 12337962 ~ 12365995 (-) False gria2a
XM_043238055.1 mRNA upstream 31392 12339733 ~ 12366108 (-) False gria2a
TU3761 other downstream 779396 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 793871 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1238288 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 1310863 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 1478154 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 33394 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 35108 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 595858 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 595858 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 846145 13154486 ~ 13159246 (-) False smim14

Expression Profile