RNA id: XM_043247959.1


Basic Information

Item Value
RNA id XM_043247959.1
length 1283
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC122351091
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2260717 ~ 2267466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctctctctctctctctctctgcgcaTGCGCAGTTCAGTGTTTTGGCTTTGAAGCGTGTGGCGCCAATCCGCTCTTCATGATGAAACCGGCTCGAGGGTCCGGAAGGGCCTCCACTCGGGGCCCCAGAGGAGCCGCTGATAGGAACACACACGGGGCCCATAAAACGTCTAAACCCAGAGAAGGCCTGCATCCGGAGCAAGCTGAGAAACACAGCGTGAATCCTGGAAATGGTAAGAATAAAAGAAACTGGAAGCCGCTGACCAAATCGTCCCTGCTGTTTCTGGAGAGCGCGCTCGGTTTGTCCGTTCTGTCTGTACTGGCATTGaagagcaaagaaaaagaagagtcACAGAAGCATCTCAACCTCCTCAAAGACCAGTTCCTGGCTGATTGTGCACGGCTTTCTGTCCCCCCGAGGAAACATGGAGATATTATGCACGTGTCCCATCAGTTCAAAGCAGAGAGTAAGAAGTCTGAGCAAGGCAGGAAGACGCTTGAGGCTTTGGAGGAGAACGTGCGCTCGGTGGTCAGCACCCTGGAGGAGATGGAGGTGCAGGTGGACGGCTTGGAGGAGAAATGCAGGATAATGAGACGCAAGCTagaggatgaagaggaagaggctCAGAAGTTTCTCCAGCGCTCAGAAGAGACGGTTCTGTGTCTTCCTGCTTTACCTTCTCGCTCGGCCGGCGAGCCCACGCTGCAGGAGCACCTCATGAAGCTGGTTCCTGATCCTCCGGCGCTGGTCCGAGCTCTTCAGGCGTCTCCTGTCCTCGAGGACGTGAGGGTCTTTCTGGAGCTCGCTCATAAACAGGTGGACGCAGAGACACAGCCCTGGACCGACCGTCTCAGACAAAGACGCTAAAGTCGACACGCAGACGGCGGCTGATAAACAAAACGGttgcttgtttatttgaaaatgaaaggtTTGCGTTGAGAAccggaaaaaaacattatcaagCGTTAATGCTGCCGTATCTAGCGCTGAATTCAGTTTTCATGGGAAACTCTGGTAAACTGATCAACAACTTCATCTTAATCTTAAGATGTGTCATGTTTGGCTTGGTTTCTGGATTTTTTcgtttaaatgttttgctgtGAAGCTGTCTATAAGGGGCACATTTCTACAGCATTGTATAAGATAATAATTAATGCTTAATTAAGCCTGAAATGACCAGCCTTTAGTCACAGCAAGAAAGCCTTCGGGTCGCTCTTAAAACGCGTGCGCTGCGATGCAACGCAATTAAATCAAAGATTAAACCGATAATATCAGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906 lncRNA downstream 14127 2245339 ~ 2246590 (-) True G603
TU812 lncRNA downstream 40988 2188501 ~ 2219729 (-) True G554
TU811 lncRNA downstream 40988 2199193 ~ 2219729 (-) False G554
TU903 lncRNA downstream 45806 2214345 ~ 2214911 (-) True G600
TU854 lncRNA downstream 56799 2191833 ~ 2203918 (-) True G567
TU837 lncRNA upstream 25458 2292924 ~ 2293517 (-) True G559
XR_006251541.1 lncRNA upstream 66876 2334342 ~ 2342289 (-) True LOC122349938
TU917 lncRNA upstream 81734 2349200 ~ 2360332 (-) True G614
TU847 lncRNA upstream 102168 2369634 ~ 2371751 (-) True G563
TU921 lncRNA upstream 110965 2378431 ~ 2379941 (-) True G617
XM_043245035.1 mRNA downstream 16146 2239138 ~ 2244571 (-) True mrpl39
XM_043247680.1 mRNA downstream 25226 2224089 ~ 2235491 (-) True jam2a
XM_043247686.1 mRNA downstream 25230 2224089 ~ 2235487 (-) False jam2a
XM_043235994.1 mRNA downstream 104774 2151651 ~ 2155943 (-) True LOC122342174
XM_043239674.1 mRNA downstream 291855 1962314 ~ 1968862 (-) False n6amt1
XM_043236686.1 mRNA upstream 796 2268262 ~ 2271714 (-) True mrpl16
XM_043236695.1 mRNA upstream 6907 2274373 ~ 2276353 (-) True txnl4b
XM_043239459.1 mRNA upstream 14469 2281935 ~ 2286067 (-) False blzf1
XM_043239451.1 mRNA upstream 14472 2281938 ~ 2286119 (-) True blzf1
XM_043239379.1 mRNA upstream 42789 2310255 ~ 2330014 (-) False tpp2
XR_006250784.1 other downstream 655733 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1131080 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1632899 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1821589 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1824592 435808 ~ 436125 (-) True G67
TU999 other upstream 421299 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1740374 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2030844 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3510105 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3578610 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile