RNA id: XM_043248080.1


Basic Information

Item Value
RNA id XM_043248080.1
length 4130
RNA type mRNA
GC content 0.46
exon number 9
gene id dtx4b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21866992 ~ 21882353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATCGGACTTTCCAGCACGAGTTGGGCATTTTACTCACGCTGCTGTGTATCGCTGGGGAGGTGTTGGGTGTCACTTCTTCAAACTCAGTTCGCTTCACACAAAGCCGCGAGCGGTTTACCAGAGCTCGTTTACTCGGAACTCTACATGATTTTCGATAACTCGCACCTCGTGGCGCAAGGAAGTATTAAGAAGGAGAAGACGCAGAAACCGAGGAACGGTCAACGCCGAATGAGTAAAACAAGGAAGAAGAATATCGGTCCGTTGACTGTTTGTTGACACTCGTGAGGAGTTGTCGGGATCTCCCGAGCCCAGCCATGGAAGAAGTGAGACGGAGATTTCTTTCCTGACGCTGCGGTCTTCAAAAATGGACACGATGTCGCTGGCCTCCGCCGCGGTCGTGTGGGAATGGCTCAACGAGCACGGGCGCTGGCGGCCGTACAGCCCGGCCGTGTCTCACCACATAGAGGCGGTGATAAGAAGCGATCCCCGCGGCGGCAGTGTCGTGTTAGGCCGAGCTGACAGCCGCCTATCGCCCTACATCATCGATCTGCACTCCATGCATCAGTTCAGACAGGATACCGGTACGTTAAGACCAGTGCGACGCAGTTTCTATGACCCCACCTCAGCCCCAGGCCAAGGTTGGATATGGGAGTGGGAAAATGACGCAGGTTCCTGGACAACCTATGACATGGAGGTGATCATTGCCTTGCAAGCGGCATGGGACCGACAGCAACCCTGGCTAGACCTGACATCGATCGGCTTTTGCTACTTCGTGGACTTCCAGACCATGACCCAGATTAACAGACAAACGCAGCGGCAGCGGCGCATCCAGAGGCGCTCAGACATGGTTTACCCACTAGTCTCTGGGTCGCTGCCTAAAACCTCACAGGCTTGGGGTACAGGCTCAGGGTCTGGAGGCATTGCTAAGGGACTAGCATCAGGTGGGGGCTCGACCGGGGCACTTCTCGGGGTAGGTGTATCTGGATCTACCTTGAGTAGAAAAGGAAGTTCTGTTTACCCAAATGGGGCGCTTTCGGTATCATCTCTCGCTCCTCCTGGACAGCCATGTGCCTGCCAGCAGTGCATTCTGGTGTTGAGTGTTAAGGCAAATGGCACCTCAACACAGACACTGGGACGTGCAACAAAGCCAAACAGTCCTAAATCCAATTTTGGGACACTTCCATCCTCCTCTGCTTCCATGTCTGTTTTAAACTCTTATTCTCATACACTACCGCATGGCACGTCTTTAAAGTGCTCGCAAACGGAAGAAGCCAAGAAATCTGCTTTTGAACAGTCATTGTCTCTTCTCACATCGGACACTGCCAATCTCTCAGTCTCCTCCAGCCGTCCGACACCTCCCACTCTGCCATCGCCGAATAAGCAGCCTTCATCCGCCCCAAGCTCTTCGTCTTCTGCAACATTTGTGCCAACTGCCATGCTCATTAATACATCAACCGGTCCCTCATCATCCACAGATTTGACATCATCTTCAACATCGTTGCCTTCTCAACGCTCTGCCGCCTGTGCTGCCCCTCTGCCAACTCGTGCCAGTCTGACAGGGCTTAGTCGGCCTGCTTTGCAGAAAATTGCCATGGCACAGTCACGGGCCCTTATTGCCTCTGGgGTACCCACAGTACCAGTGAAGAATCTTAACGGCTCCAGCCCTATCCACCCGGCTTTAGCTGGTATTACGGGTATTCTGATGAGCGCAGCAGGACTACCTGTATGTTTGACCCGTCCACCAAAACTAGTCCTGCATCCCCCACCTGTCAGCAAGAGTGACATAAGACCAATTCCTGGCATTGGGAACTGTTGCCGCAAGACCACCAAAAAACAAGCACGCAAAGGTAGAACACCTGAGGAAGTGGTAAAAAGGTACTTACAGAAGGTCAGGAATCCCCCAGAAGAAGATTGTACTATCTGTATGGAGGCTCTGGGGGGGCCCTCGGGGTATAAGGGTCCAGGTGTAGCAAGTGTTTCTCGTGCTGAGTCGGTTGGAAGACTGGCAGAGTGTGGACATCTTTATCACCTGCAGTGCCTAGTGGCCATGTACAACAATGGCAACAAAGACGGTAGCCTGCAGTGTCCCACATGCAAGACAATATATGGAGTAAAGACAGGCAACCAGCCCCCCGGTAAGATGGAGTACCATGTCATCCCGCACTCACTTCCAGGACACCCAGACTGCAAAACCATTCGCATCATCTACAACATACCCCCCGGGATACAGGGTCCTGAGCATCCAGATCCAGGGAAGCCTTTTACTTCAAGAGGATTTCCACGTCACTGCTATCTTCCAGACAATGAAAAAGGACGCAAGGCGTTAAGGCTGTTATTGGTGGCGTGGGATCGAAGGCTGATCTTCTCAGTGGGCACCTCCAGCACCACAGGAGAATCAGACACTGTCATCTGGAATGAGATCCATCACAAGACAGAATTTGGCTCCAATCTAACTGGACATGGCTATCCAGATTCTGGCTATACTGACAATGTGGTAGAGGAGCTCAAAGCCCAGGGCATCACTGAAGATGAGGAACAGCAACTGTGAAGAGGACAGGATGTGCTCGATGgcagtggggaaaaaaaaaagataatgctACTAGATCTCTATTTCTAGGAGTGCAACTGAGTTCAGAGATATGTGTGAATTCATATGACTCTTGATATATAACAATGTGACCAATCGGTACGAATAAGTATCCTGACCTCAACGCAAATTAGGGCACAGAATAACGAAACTAACGCGAGAACGATATTTGGTTAAAGGTGAAAGATGGGTTTGAAAGAAGAAGGAAAAGGAAAGTGTGAAAAGCAAGAATGGGAGGTGGAGGGGACTTGAGATAGAAAAATGTGGGAATAGGAAGACTAAGAAAATGCAGGTTATTAAAGCAGAGACGTGTTTTATCTGCTTGAGCGACGTTGCCGTGAGAGTTTGTGTAAGTTGTGTTAAACAGTTGTGTGAGTGTATTTAGTCAACTCCGGTACCTCCTAACTGGATTTCTGTTTTTTCAGTTTACTAGAATTCTGAAGTATAGTTTAGTGCAAATGAATGCttgtattataatttgtattatcaTACAACGTCACtcctttttttgtgtattgAGAATTTATACTATTTTTGTACGGATGATAACATGCGCATACGAttcagagttttgattaatccaaaaataagcagcaatttttttttttaaaccttgaaTTCATTTATGCTGGTTTATAGGAAGCATGATAAAACTAACTGTTCTTCCTCAGATAAAATACGACTTAAAAGTTGTCTCTAATGCATCTAACAGTTATAGATTGTACAAGATCACATTTTCACGGTACAGGAAACCAATTTAGTGGTTTTAGATAGGAAGTGCTGCTTTACTTCACATTCAGCATTAAGTATGCTGatctttattaaaagcatttataagcAAATGAATTTAGACGAGAGAAGGAATAGAAAGCACTTCGTTGCTAGAAAGATGGGTAGTTTATTGATCCCTGAAGGTCAGTTTAGTAATAGTTTGCCAAAATGAATTTTGCAAACTGTTATAGCTCTTCAGCTGTTCTTTACTGTCCTTATATCTCGTTTTAGGCCAGTCTGTATGTTAGGTCAGTTATTGACCTGTTTTATAACGATCCACGTTTAAGAACATGCcgttgtttgtgtatgtttgcatgtgtgAGCCCGTGCAACATGTGTACGTTTGCATTTGTGCTTGATTAAATGTAAGAGTGTATGCTGTGCATCCACAACACAGAGGTACGGTGTTACTCATCTGCATAATTGtcttcatgcatttattttgtatttctctttttttattattgtttttttgtattttcctagtttactgtattttaagaatgtttcaTGCTGAGAAATGTTATAcgtagttaatttttttttttctgtctatacaacaaatgctatttttgttCATAAGAAGTTGGGGTGGGGATAGCTTTGACCAACTGCATTATGTAGAGGTTTGCAATCTGTTAAGCATTAagataaaatgatcaaataaaaatttgtaattttgtgaGGGGGAAACTTTTTGATAAGCGGAGAATCGAGCATGATGGTACCtgtatatgaaaatgaaaaataaaagaataagcGAAATCAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06058 DTX; deltex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7183 lncRNA downstream 246411 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 315757 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 456421 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 1148102 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 1148119 20711230 ~ 20718873 (-) True LOC122349798
TU7636 lncRNA upstream 161549 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 402807 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 402865 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 466161 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 466161 22348514 ~ 22382972 (-) True G5366
XM_043244828.1 mRNA downstream 19837 21833362 ~ 21847155 (-) True LOC122348936
XM_043244817.1 mRNA downstream 34058 21827556 ~ 21832934 (-) True LOC122348927
XM_043244807.1 mRNA downstream 54403 21808791 ~ 21812589 (-) True LOC122348917
XM_043244797.1 mRNA downstream 67248 21761881 ~ 21799744 (-) True LOC122348907
XM_043244789.1 mRNA downstream 110126 21738022 ~ 21756866 (-) True muc13a
XM_043248092.1 mRNA upstream 7999 21890352 ~ 21900526 (-) True smu1b
XM_043248130.1 mRNA upstream 19114 21901467 ~ 21905151 (-) True rps6
XM_043238887.1 mRNA upstream 23348 21905701 ~ 21906555 (-) True LOC122345057
XM_043249473.1 mRNA upstream 64508 21946861 ~ 21951154 (-) True zgc:111983
XM_043249481.1 mRNA upstream 64508 21946861 ~ 21951096 (-) False zgc:111983
TU7268 other downstream 70554 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 94230 21724387 ~ 21772762 (-) True G5108
TU7263 other downstream 100708 21720060 ~ 21766284 (-) True G5104
TU7256 other downstream 143927 21719100 ~ 21723065 (-) False G5104
unassigned_transcript_106 other upstream 1765 21884118 ~ 21884190 (-) True trnat-ugu
TU7673 other upstream 377086 22259439 ~ 22328929 (-) True G5356
TU7773 other upstream 657331 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 1031547 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1890270 23772623 ~ 23916448 (-) False LOC122351696

Expression Profile