Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043248486.1 |
| length | 1360 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | hmx4 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056699.1 |
| NCBI id | CM032068.1 |
| chromosome length | 31761587 |
| location | 19878191 ~ 19879651 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:1900052 | regulation of retinoic acid biosynthetic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU6565 | lncRNA | downstream | 68560 | 19598210 ~ 19809631 (-) | True | G4609 |
| TU6573 | lncRNA | downstream | 245938 | 19631098 ~ 19632253 (-) | True | G4615 |
| TU6568 | lncRNA | downstream | 266676 | 19608383 ~ 19611515 (-) | True | G4611 |
| TU6569 | lncRNA | downstream | 266676 | 19608383 ~ 19611515 (-) | False | G4611 |
| TU6564 | lncRNA | downstream | 274990 | 19598210 ~ 19603201 (-) | False | G4609 |
| TU6634 | lncRNA | upstream | 56739 | 19936390 ~ 19936759 (-) | True | G4671 |
| TU6683 | lncRNA | upstream | 58368 | 19938019 ~ 19938401 (-) | True | G4713 |
| TU6780 | lncRNA | upstream | 257421 | 20137072 ~ 20139930 (-) | True | si:dkey-9i23.16 |
| XR_006250988.1 | lncRNA | upstream | 276013 | 20155664 ~ 20157523 (-) | True | LOC122345298 |
| TU6910 | lncRNA | upstream | 320344 | 20199995 ~ 20265069 (-) | True | G4870 |
| XM_043251231.1 | mRNA | downstream | 92544 | 19777091 ~ 19785647 (-) | True | clgn |
| XM_043251226.1 | mRNA | downstream | 120835 | 19665097 ~ 19757356 (-) | True | maml3 |
| XM_043251230.1 | mRNA | downstream | 253950 | 19611829 ~ 19624241 (-) | True | tesk1a |
| XM_043244156.1 | mRNA | downstream | 281189 | 19589806 ~ 19597002 (-) | False | zfp91 |
| XM_043249777.1 | mRNA | upstream | 1474 | 19881125 ~ 19882724 (-) | True | hmx1 |
| XM_043245252.1 | mRNA | upstream | 32029 | 19911680 ~ 19916332 (-) | True | adra2c |
| XM_043246091.1 | mRNA | upstream | 87216 | 19966867 ~ 19984961 (-) | True | dok7b |
| XM_043246100.1 | mRNA | upstream | 89208 | 19968859 ~ 19984964 (-) | False | dok7b |
| XM_043242601.1 | mRNA | upstream | 115539 | 19995190 ~ 20032019 (-) | False | rgs12b |
| TU6528 | other | downstream | 339045 | 19535972 ~ 19539146 (-) | True | cdk2ap2 |
| XR_006250498.1 | other | downstream | 1997774 | 17815824 ~ 17880417 (-) | False | znf827 |
| XR_006251556.1 | other | downstream | 3804271 | 16069177 ~ 16073920 (-) | False | alg11 |
| TU5142 | other | downstream | 4647305 | 15230539 ~ 15230886 (-) | True | G3571 |
| TU5072 | other | downstream | 4848571 | 15020642 ~ 15029620 (-) | True | G3515 |
| unassigned_transcript_102 | other | upstream | 217304 | 20096955 ~ 20097026 (-) | True | trnae-cuc_3 |
| unassigned_transcript_104 | other | upstream | 233099 | 20112750 ~ 20112821 (-) | True | trnam-cau |
| unassigned_transcript_105 | other | upstream | 233491 | 20113142 ~ 20113213 (-) | True | trnae-cuc_4 |
| TU6776 | other | upstream | 257421 | 20137072 ~ 20139930 (-) | False | si:dkey-9i23.16 |
| TU6779 | other | upstream | 257421 | 20137072 ~ 20139930 (-) | False | si:dkey-9i23.16 |
