RNA id: XM_043248734.1


Basic Information

Item Value
RNA id XM_043248734.1
length 2323
RNA type mRNA
GC content 0.44
exon number 15
gene id micu3a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9771041 ~ 9794196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAACTCGAGAATCTTGCCCAAATTCTGTCATACCAACAATAATGGCCGCTGTGCGCAGACTAGGAGTCATATTTAGGAGTTTGTCGCTGTCGTCAGCTACACGGAACGCGCTTTTTCGTCCTCCGGGGAAGGATAACCGACGCGTACGCCGAGGAATAGCAGTTGCCGTGGGCGTCGCGGCCGGAGGAGCGGcgttgtgttattattattcagaaatGTGCGGAGTCAGAGGGAGGAAAGCCCCGATGAGAGGAATGGGCAGTCGGGTTCTGCTGCCTTCGCTACCCGCTGTAGCCGCCAAGGAGAAGGCTCCACTCTTTGATTTCGATGAAAGCGACGTGTACATGTCGTCTCATGAGCATCGTTTCCGTCTCTTCAGCTCAGTGGAGTATGAGGGACAGCTGTACATGACTCCACAGAACTTCATCGAGTCGGTCACCATGAGCGAACCTCGCATAAGGAAACCTTGGAGGTCCCTCACCAAACAGGAGCTGGAGAAGATCTTGTCTGACACTCCACCAGTGTGGAAAGGAACATCTAAGCTGTTCCGGAACCTTCGGGAACGAGGCATCATCGCTTACACAGAGTATCTCTTTCTGCTCTGCATTCTGACAAAGCCTCACGCAGGCTTTAAGATTGCTTTTAACATGTTTGATGCTGATGGTAACCAGATGGTGGATAAGCGGGAATTTCTCGTGttgCAAGAAATCTTCCgaaagaaaaatgagaaaaaaggaagaaagggCGACGCTGAAAAATCTGCTCAACTGGTGCTAAAAAAAGAGTGTCAGGAGTTTGTGCCCAGGAGCTACTGGGACATGCTGAGACGTGGCGCGAGCCAAGCCCTGTTTTCTGACCTGGCAGAGCGTGCCGATGAGAACATGATGATTGACACCACTCTGCTTGTGCACTTCTTTGGCAAGAAGGGGAAGGCGGAACTAACATTCGACGACTTCTACAGGTTTATGGATAATCTGCAAACTGAGATGTTGGAGATCGAGTTCCTGACTTATTCCAAAGGCATGACCACCATCAGTGAGGAGGACTTTGCACGAATCTTGCTGCGCTACACTAACGTAGAAGATATCCGCAGCTATCTGGAGAATGTGCGGCAGTGCATACCTGATGAGAAGAAAGCAGAGGGCATCACCTTTGAAGAGTTCAGGTCTTTCTTCCAGTTCCTCAATAACCTTGAAGACTTCGCCATCGCCATGCAGATGTACAACTTTGCCTGTCGATCTATTGGACAAGATGAATTTGCTCGGGCGGTGTATGTCGCAACAGGCCTCAAACTGACCCGTCACCTTGTTAACACAATCTTCAAGATATTTGATGTGGATCATGATGATCAGCTCAGTTACAAAGAGTTCATTGGTATCATGAAGGACCGGCTGCACCGTGGAGGCCGGGGCTATAAGACCGTAGAGCGTTTTACGTCATTTAGATCGTGTCTGAAGAAGGAACTGGCAGGCAGCAGGTGAATGACAATCAGGAACGTGGATTTTCTGTCCcagaataaaacagatttcTCTGACCTGGAAAAGTTTAAGAGTAGACATACTGCTAAAGATTCCATCATGACATCTACCTCCTCCTCTTCTGATTTTGAAACCATGGGAAACTCGGATTGGGATAGTGTCTCTGCAATCAAGCTCCCTGCCCTGCATGTTTTAGTACCTGCACAGACCTGCATGATCAAACTTTCTGTAATCAgctattaatgtattaataatttgcATGCAACCTGGAGGATGACATATCTCTCTGCCATGTAACCAAACTTCAGCTAGTacaatttttgtatgttttgctTTTGCACATGGGTGTCATGGCAAAGTAAAGGCataattttcatgcattttaatagaaatgttttaagcaAGATGAGTTACTCATTATGATCTATTCTgcatatttatactgtattatattgcaacatgcatttcattatgccaatttaattttttttttccatttataggATTGTTTAAATATACCGAATCATACTGTGTGAAAACGGTAATACTTTATGGTATTAGACTACCAATATCATCAAATTGGGTTTTAAAGAGATTGTGTAGCTCATGTAGCATTAAGCCCAATAATGAACATTGCCttaatataaaattgttattttatcacacaatttatttttgaaacagTATGAGTGTACAAAGATTGTTCAAGGTTGACTTGCCACCTGAGGCAACTGATAAGTCTAAGCACGCTTTATAAGACTGTACTGTAATGCAAGCACCTAAAAAATACAGACTTGAAATGCCATATTATGCAAGTCAATAAAGtggtttaaatatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252042.1 lncRNA upstream 708432 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 717568 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 739218 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1028520 8740832 ~ 8742521 (+) True G1979
TU2880 lncRNA upstream 1040647 8730057 ~ 8730394 (+) True G1977
TU3213 lncRNA downstream 284689 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 578766 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 1033489 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 1040835 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 1043429 10837625 ~ 10838465 (+) True G2352
XM_043231599.1 mRNA upstream 76755 9633719 ~ 9694286 (+) True tusc3
XM_043238020.1 mRNA upstream 506971 9252816 ~ 9264070 (+) True pi4k2b
XM_043238000.1 mRNA upstream 518871 9237693 ~ 9252170 (+) False hgsnat
XM_043238008.1 mRNA upstream 518871 9237938 ~ 9252170 (+) True hgsnat
XM_043247547.1 mRNA upstream 534124 9234026 ~ 9236917 (+) True itln1
XM_043241164.1 mRNA downstream 5630 9799826 ~ 9805483 (+) True vps37a
XM_043236706.1 mRNA downstream 32907 9827103 ~ 9863686 (+) True mtus1b
XM_043245813.1 mRNA downstream 71968 9866164 ~ 9888659 (+) True pcm1
XM_043246000.1 mRNA downstream 71968 9866164 ~ 9888659 (+) False pcm1
XM_043245884.1 mRNA downstream 71968 9866164 ~ 9888659 (+) False pcm1
TU3085 other upstream 358604 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 735441 9035086 ~ 9035600 (+) True G2063
TU2886 other upstream 992149 8771108 ~ 8778892 (+) False LOC122342651
TU2848 other upstream 1069669 8700440 ~ 8701372 (+) False stim2a
TU2774 other upstream 1163327 8606828 ~ 8607714 (+) False cxcl8a
XR_006252046.1 other downstream 1003 9795199 ~ 9795414 (+) True LOC122353673
XR_006252048.1 other downstream 2018 9796214 ~ 9796429 (+) True LOC122353681
XR_006252049.1 other downstream 3234 9797430 ~ 9797648 (+) True LOC122353686
TU3224 other downstream 450961 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 462466 10256662 ~ 10333672 (+) False fat1a

Expression Profile