RNA id: XM_043248810.1


Basic Information

Item Value
RNA id XM_043248810.1
length 6318
RNA type mRNA
GC content 0.50
exon number 26
gene id jag1a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24923196 ~ 24951265 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGATGGAGCGCTCTCCTGGCCGCACTCGCAGCTTTTCCTCTCCAGTCCGTGGGCATTGTTGTAAAAACAGAAGGACAATACAAGAATAGAGTGGCGGATAATAGAGCCTCAAAAGGGGCATCAGGGAATTTGTCCTCTATATGAGAGCCGTGTGTCGGCTGAAGTTTAGTTTTACAGGCAGCGAGCAGACAAACGGAGGAGGCATGACTCTGAGACGGAGTCCAAGTTTTGCGGTGCTGTGCGTTCATGTGCTTCTGCGGTGCCTGTGGATGAGGGTTTGCGAGGCGTCGGGGCACTTTGAGATGCAGGTTTTGTCCATGCAGAACTCGAACGGCGAGCTGCAGAGCGGCGCGTGCTGCGACGGCGCGCGCGTCGCGGCGGACCGCTCGTGCGCGGCGGACGAGTGCGACACGTTTTTCCGCGTCTGTCTGAAGGAGTATCAGTCGCGGGTGTCTTCGGGAGGCCCGTGCAGCTACGGAAGCGGATCTACTCCCGTTATCGGTGGGAATACTTTTTCTGTCAAGCCCCTCGACGGCGCGAGCGATAAATCCAGGATCGTGCTGCCCTTCAGTTTCGCCTGGCCGaggTCATATACATTGATTGTTGAGGCTTTGGACTTCAATAATGACTCAAGCACCGGCAGCATCAACGGTCAAGTCATAGAGAAAGCGGTCCAGTCGGGCATGATCAACCCAAACCGTCAGTGGCAGGTCTTGAAGCACAACGGCCCCGTGGCTCAGTTCCAGTTCCAGATTAGGGTGACCTGCGACGAGCACTACTTCGGTTTCGGCTGCAATAAGTTCTGCCGGCCCAGAGACGACTTCTTCGGCCACTACACCTGCGATCACAATGGAAACAAGACCTGCTTGGAGGGATGGGCTGGCCCAGAATGCAACACTGCCATCTGTAAGCAGGGCTGCAGCACTGAGCATGGCTCCTGTAAAATGCCTGGGGACTGCAGGTGTCTGTACGGCTGGCAGGGAGAGTACTGTGACCAGTGTATCCCTCATCCCGGCTGTGTGCACGGCACCTGCGTCGAACCCTGGCAGTGCCTGTGTGACACCAACTGGGGAGGACAGCTCTGTGACAAAGACTTGAACACCTGTGGCACGCGGCAACCCTGTCTGAACGGTGGCACCTGCAGCAACACGGGACCAGACAAATACCACTGTGCCTGTCCCGATGGCTACTCGGGACAGAACTGTGAGAGAGCGGATAACGCCTGTCTGTCTGAGCCGTGTCTGAACGGAGGCAGTTGTGTGGAGTCCAGTCAGGGCTTtgagtgtcagtgtgtgtcAGGCTGGACCGGACCGTCCTGCAACATCAatGAAGACGACTGCAGTCCGAACCCGTGCAATCACAGCGGTGTGTGCGTGGACCTGGTGGACGGCTTTAAATGCGTTTGCCCCGCTCAGTGGACCGGAAAGACCTGTCtcattgATGCTAATGAGTGCGAGGAAAACCCGTGCGTCAATGCACACTCCTGCCGGAATCTGATTGGAGGATACTTTTGCGAGTGCCTCCCTGGTTGGACGGGCCAGAATTGCGACATCAACGTCAACGACTGCCACGGACAGTGTCTGAACGGAGGACTGTGTAAGgatcTGGTGAATGGATATCGGTGTGTGTGCGCAGCAGGCTTCGCGGGTGAGCACTGCGAGCGGGACGTGGACGAGTGCTCGAGTCGACCCTGTCTCAACGGTGGACGCTGTCAGGACACTGTCAACGGGTTCCAGTGTCTGTGTCCACCCGGTTTCTCAGGGGCCGCGTGTCAGCTGGACATAGACTACTGTGAGAGCGGCCCGTGTCAGAACGGAGCTCAGTGCTTTAGCCTGGCCTCAGATTACTACTGTAAATGTCCCGAAGATTACGAAGGAAAAAACTGCTCCCAACTTAAAGACCACTGCCTCATCACACCATGCCAAGTGATTGACAGCTGCACGGTTGCCGTGGCGTCGAACAGCACCCCGGGGGGCATGCGGCTCATCTCCTCTAACGTTTGCGGTCCTCACGGCCGCTGTCGAAGCCACGCCGGAGGACACTTCAGCTGCGAGTGTCAGGAGGGGTTCACCGGCACGTACTGCCACGAGAACATCAACGACTGTGAAAGCGGCCCCTGTCGTAACGGCGGCACTTGTATTGATAAGATCAACGCGTATCAGTGTATCTGTGCTGACGGCTGGGAGGGACACAACTGTGAGAGCGATATTGACGACTGCAGCATGAACCCATGTCGAGATCGAGGAGTGTGCCGTGATATGGTCAATGACTTTTACTGCGAGTGTGAAAATGGCTGGAAGGGAAAGACCTGTCACTCACGCGAGAGTCAGTGTGACGAGGCCACTTGTAAGAACGGGGGCACGTGCTCTGACGAAGGCGACTCGTTTAAGTGCATGTGCGCTCCGGGATGGGAAGGAGCCACCTGTAACATAGCAAAGAACAGCAGCTGCCTGCCGAACCCCTGCGAGAACGGAGCCACGTGCGTCGTGACGGGGGACGGCTTCACCTGCGTCTGCAAAGAAGGCTGGGAGGGGCCCACCTGCAGCCAGAATTCCAATGACTGCAACCCACAACCATGctatAACAGCGGGACGTGTGTGGATGGGGATAACTGGTACCGCTGTGAGTGTGCCAGTGGATTTGCGGGGCCGGACTGTCGAATCAACATCAACGAGTGTCAGTCATCTCCGTGTGCTTTCGGCTCCACATGCGTTGATGAAATCAACGGCTACCGCTGTCTGTGTCCGGCTGGCAGAACGGGCCCCCGGTGTCAGGAAGTCACGGGACGTCCGTGTGTTGTCGGGGGTCGGATCGCCGAAGACGGAGCGAAGTGGGCCGAAGACTGTAACACCTGTTTCTGTCACAGGGGTGTTGTGAGCTGTACTAAGCTGTGGTGTGGCCCTAAACCTTGCCGTGTGCTGGGCTCGGGGAGAGGCGACTGCGCTCTGGGGCAGCTGTGTGTGCCGGTGCGGGACGAGCAGTGTTTCGTCAGGCCCTGCTCCTCTCAGGGCGAGTGCTGGTCTGCTCACCGTCCGGCCGCGAGAGCCCGCTGTCAGCCCGAGAGCGACTGCGCCAACGTCACCTTCACCTTCAACAAGGACACCATGCCTCGGGGAGTGACGGTGGAGCAGGTGTGTCGTGAGCTCAGGCACCTGTACGTGGCGAAAAACGCTTCGGCCGAGTTTTCCATCTCTATGAGCTGTGAACTCTCTTCTGCTGCCAATAATGAGATCCATGTGGCCATCCACGTGACCGAGGATGGCATTCACGGCCGGGTTCCTGTTAAAGAAATCACGGACAGCATCATCGATCTGGTGAGCAAACACAGCGCAAACAGCTCCATCATCGGCTCCATCGCTGAGGTCCGTGTTCAGCGCAGACAACCACCCAACCCCAACGACTACCTGGTGCCCCTGCTGGTGTCTGTAGTGACAGCGGTCTGGGTTTTGGCGCTGGCGTCCGTGTTCCTGTGGTGCTTGCGGCATCGACGCAAACAGAGCTCCAGCCCCACCGCCATCAACCCCTCGGCCCCCTACTCCACGGGCAGCACCGAAGACAACACGGTGAACAACGCCCGCGAGCAGCTCAACCAGATCAAGAACCACATCGAGAAGAACGCGTCCAACGGCAGCCTGCCGGGCAAAGAGCTGCACTGCGACGACAAGAACAGCGTCAACTCCAAGATCAGGACGCATTTCTCCGAATCCGCCAGACTGGTGCAGGACGACTCCAGCAAGCGCCTGCAGAAGACGCGCTTCCCGCGTCAGCCGGCCTACATGCTGGTGGACAGGGACGACAGGCTGAGCTCCGCCGGCCCACACTGGACTAATAAACGGGATAACAGAGACCTGGAGTCGCAGCACAGAGCTCCGGACGCACAGCCCAGAGATCTGGACGCACAGCACAGCTTGCACAAAATGGAGTATATCGTATAGCGGACCGCGACTGTCGTTGCTACGCGATGTCACATGATGTCAAGCGGACGAAGACGTCTCTCGGGATCAGAGAGCTGGCTGTTGACTGTCACGACCGGGCCGGACAGTGTTTGTTCGGTCGGACCACGGGCTGGTCCGTTTTATGGCGTCTGGGGGACGTCATCCTGTGCTGAGCTTCTAGCCTAAATCAGAATGTACAGTAGTTGGCCAAAATGTAATTGCGTGAATCTCACCGAAACACGTCCAGGTCGAATTTCACCCTGAATTCAGTAAACATTTGAACGACGATTACAGGAACGGTTCACCcgaaaaatgacatttctgtcattgtttacttaGCCTCAACCTTTATGAGTTCGTTGAACGCAAGGGAAAATAGCTCGAAGAATGTCGGCAACCAGacagttgacggtagccattgacttccacagtttggaaaacaaaaaattatatggGTATCGTCAGCCGTTTAGTTACATGCAGTCTACAAAGTAGCTCATCTTGTGTTCGAAAGGAGAAAGACACTCGCACTGGTTCTCAACTTGAggctgaaaaataattttttttggcgaactgtccctttaagcaaCTTTTCCATCCAAAAGTGAAATACCGTATTCATATACAgtacaaaaactgtaatactaagtgtttttttatgcaaatcagGATACTGcgtaattaaaataacttgaattatttgttgctttttttgtattgcataacattttttataatgataaacaAGCGACGTAAAAATATAAGTTGGCCTGAAATTAGACATGGAAATGCTCTTGAGGGTCGcacccaaaaaatgtatttctgtcatcgtttactcagcCTCAAGATGTTTCATTCCtttgcaaaataatttaaagaatgCCGGTAACCAAAAAGAAGACGGTAGCCGTCCACTTCCATAGTATGAAAAAGATTATATGGAAGTCCATCAACTGTTTAGTTACACACAGTCTACAAAATATCTCTTCTTGTGTTCATacgaagaaagaaactcatgcaGGTTGTGAATTTTaatctgaaatgcatttatatacagtacaaatactaTAATAcgaagatttttttaatgcaaatccGGATACTACAGTTAGAATTGCTTGAATTattctttttcctgtttttgtatTGCATAAAACCTTTATAGTGCTAAACAACggttgtaaaaaatataatttgggGTGAAATTAGACatggaaatgtttttgaggGTCTTGTGAGCTTCATCCAGTTGAACTGCACGTGCAGACTGTGTTCAATGTTTATAATGTAGAACTTAATGCACCAGAAATAGCTTGTGAATTATTTCCAAAAATCAATGATGACTGGTGTATCATGTGCTCGAAGATTGTATTTAACTCCCATTTATTGGGTTCTTGACTGGATTTTATTTTCCCGCTCTTTCTAgcagttcatttttatttattctgctcttttttttctttttattttgtacaggcAAACAGGTCATGCTTTTTTAGAATTTACTTTCTATATGAAGAAGTTCACTGTCCGTTTAGATGTTATTGTATAGAtgaatttgtacatattttctaattaatcactgtgtatatttgatttattaacttaataatCGAGAGCCTatcgtttgtttttatttatatacattgtttAGGTGCGAGAATGGGACCGCTTGTGTCCCACCTTTGTATTTTTGGATGGAAAATATTGTCTCTTATTTCTGAAATGccaaaataatagtttattttttgaagaataGGTCGTTTGTGTCTAAATCCAGAATGCAATGTGCAATGTCTGTTTCAGAAACCATGTGCATGTCCTGAGACGTAGGCTAGATGGTTTTTCCGTCTAGTTTTGATACACACTTTGTCTGTTCAGATACACTTTCGTAGAATGTTACTTTAAAACCATTCCTGAATACGTTTAGCATATTTTCTGCTCATAGCCGTGTTAAATGAGTTCGGCAGCCCAGGATATCAAACAACGCTTGTCTAGAGTTTTCTGGTAAACCACAGTATTCAAATGTACTTTAACCAAAACGCCTAAAGGGAACGAGCAGTATTAGAAGTGCAATGTTTgtacagtaatataaaatatgaagaaaacgGAACTGAATGTGACACACGAGAcgaaaatgaaatcaaaatcacTTTAGTAGGCCACTTTTATTAATTGTACTTTACAGTCAGACCGCTGGACTGTGTTTTGGTTCAGTACCACGAATTTGTTgaatcgttttttttcttcttgtgtttgTGAAATCCTACGAAAAAGCAGAACCATGAAAACAGATCATCCTGGGGtttgtcatgcattttaattcagttgtTTACATTAGGATTccttaaatcaaataaaatttcacTTGAATGTTTTCAA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030878 thyroid gland development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8832 lncRNA downstream 9728 24911141 ~ 24913468 (-) True G6061
TU8826 lncRNA downstream 49655 24872629 ~ 24873541 (-) True G6058
TU8818 lncRNA downstream 54191 24868441 ~ 24869005 (-) False G6056
TU8811 lncRNA downstream 59822 24844701 ~ 24863374 (-) True LOC122345669
TU8864 lncRNA upstream 35719 24986984 ~ 25204897 (-) True G6077
TU8869 lncRNA upstream 46387 24997652 ~ 24998787 (-) True G6081
TU8870 lncRNA upstream 56643 25007908 ~ 25009573 (-) True G6082
TU8883 lncRNA upstream 128731 25079996 ~ 25081855 (-) True G6091
TU8898 lncRNA upstream 302132 25253397 ~ 25258307 (-) True G6104
XM_043239967.1 mRNA downstream 20969 24895841 ~ 24902227 (-) False psen2
XM_043239977.1 mRNA downstream 21129 24895841 ~ 24902067 (-) True psen2
XM_043239933.1 mRNA downstream 31729 24883400 ~ 24891467 (-) True spast
XM_043245367.1 mRNA downstream 111026 24806784 ~ 24812170 (-) True gprin3b
XM_043229413.1 mRNA downstream 120771 24785279 ~ 24802425 (-) True zgc:154142
XM_043225513.1 mRNA upstream 25775 24977040 ~ 24984030 (-) True esf1
XM_043225434.1 mRNA upstream 25775 24977040 ~ 24984012 (-) False esf1
XM_043244925.1 mRNA upstream 73457 25024722 ~ 25063882 (-) True LOC122349000
XM_043226198.1 mRNA upstream 183631 25134896 ~ 25138647 (-) True LOC122329700
XM_043226755.1 mRNA upstream 257512 25208777 ~ 25225402 (-) False LOC122329893
TU8816 other downstream 52731 24868441 ~ 24870465 (-) True G6056
TU8136 other downstream 751134 24167385 ~ 24172062 (-) False G5624
TU8851 other upstream 21226 24972491 ~ 24973371 (-) True G6073
TU8856 other upstream 37511 24988776 ~ 24993345 (-) True G6074
TU8865 other upstream 43218 24994483 ~ 24995820 (-) True G6078
TU8873 other upstream 75398 25026663 ~ 25028129 (-) False LOC122349000
TU8871 other upstream 83599 25034864 ~ 25062531 (-) False LOC122349000

Expression Profile