RNA id: XM_043248886.1


Basic Information

Item Value
RNA id XM_043248886.1
length 2616
RNA type mRNA
GC content 0.48
exon number 21
gene id sclt1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7805692 ~ 7818399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTTCCTGGGGATGTATCTGATTGGCTCTGAGAGTGAATCCGAGCGTCCGTGAAcatgaatctgattggctgggagAATCTTTAAACTACAAGGCGGAAGGATTTGGAGtTGCAGATGCAAAAATGACAACAGAAGTCGACTTTCTTCGAGATCAAGTGAATCGTTTAAACTCCGTCCTGGGTCGATATCAGGATGAATTTCCTCCTCCTTCCTCGGTGTCACAGacaGGAGATGTGGTCCTGGAATCTGCAGCTCCCTGGCTTTCAGACAGAGGTCTAATGGCTCCTCTAATAGAAGAATATGACAGGCACATACAACAGATGGAGATGCAGCTCAAGTTCTATCAGAGGCAGATGACAGACGTCAAAGCAAGCCTGGAGCAGGTGGTTAAGGAAAACGAGCGgctTCACGCAGAGCAGAGAATGTCCATTGAAAAGCAGTTGCAGTCTCTGTCCATCGGAACAGGAGGAGACGCGACAGCGGACGCAATCGCCGTTAGCAATCTGGAGGAGCAGGTCAAGTGTTCCGTGGAGGAGAAAGAACGGGCTCTTCAGATGTGGCAGACTGCTTCACAGGAGTTGGATCGACTTCAGACGCAGTATCAGAGCTCCATAAGTGACGGACAAATACATGCAGTTGAACGGCAACATATGCAGACCAATCAGCAGTTTTTGAAGACTGTGGCGGAGCAGAGCAGTGAGCTGGAGGAGTTACGCAGCCAACTCAGGCAAGCCAAGCTTGAGCAGAGATCTTCTGCGACTAAAGTGGAGGAGATGACCAGACTCCTGCAGAATGTCCAGGATCAGATGCAGAGGAggGAAGAAGATGCGGCAGAAGCTCAGGGTAGAGAAGAAGCATCTGATCGGAGACTACAGCAACTACAAGCAGCACTGAAGCAGCTAGAATCCAGaCTCAAAGCTGCAACGCAGGACTCTGAGTCAGTGCGCAGGAAGCAGACGGATTGGGAGCGGCAAGTGGGAGAACTGCAGGGTCGCTGCGCTTCTCTGGAAGAGGAGAAATTTGAAGCCCTCAGTCGCCTCCGCAACTCCATCCAGCTGGCTGAGGAAGCCTCGCTTCAGAGAGAACAGGCTCAGCTGAGGGAGAAACAGAGAGCAGAAGAGATGGAGAAGATGAAAGATGCCATGAAGCAGCTGATCCAGGATGCTGCCATGCGCACCAGGAAAGAGGTAGAGAGTGTCCGTAAGCAGTGTAACGTTCAGATTCATCGTATGGCTGAGGAGCTTTCTGCCCTGCAACTGGAATGTGCCGATAAAGAGACACAGATTGAAAGAGCCCACCGGGAGAGAAAAGCTGTGGAAGAGGAGCTGGAGaagGTCTATAAAGAGGGCCGAATTGGAGAGCCTGAGATGAGGAAGATGGAGGCTCTTCATCAGAGATGCTTAAATGCTGAACGACTGAAAGACGAAATGCAACTCACACTCAACAGCACTAAAAACAAGATGAAGAAGATGGAGATGGaGTATTCGGAGGAGCTGTCACGCTGTCAGGAGGAGGTGCGCAGGCTGCAGTCCACCTTGACAAGTGCAAGACAGGAGAGTTCGGCCATCAGCGAAGAGAGACTCACGCTGCAGCAAGAGAACCAGCAACTGCACAGAGACATGGAAGCGCTGCGCAAAGAGTGTGCACTCGCTCAGAGACGTGCCAAACAACAGgtgtcTTCGATGCAGCAGGAGCTGTGTGTGAAGGAGCAGGGTTTGGAGACCAGGctgagagagatggaggagaGCAGCAAAAACTCCAGCGCTGGTTTGACCAGACTGCTGCTCGCGCAACAGAAAACCATCAGCCGCTACAAAGACGAGGCCAAGAACCTCACTCAGGCTTTCCAGCAGAAACTCAACAGCCTCAGGTCAGAATTGAACAGACAGAAGCAGCGCGCTCAGGAACTGGAGATCCAGATGGAAGCTGATCATCAGAAGATACTGGAGTACGAAAGGCAGGTTTCAGAGCAGCAAGAGAAGAACACACGTTTACAGAGGCGTCTTACTCAGGCAGAGCAGCGTGCAGCCAGTGCATCACAACAGCTGAGTGTGATATCACAGCGGAGAAAAGCTGCATCCATGATGGATCTCGAGACTTTATCATAGATAAACAGAAGCTGGTTTTCACCATCATCCTCTTTTATAAAGGATCACCCTGATCAGATGTTTTTTTGGCTTCACAGTGTTTAACGTCTAGAGCTTTCACTGGCAGGATTCCCATGTGTTCAATGgcaattaatgtaataaaaagagGTTGAGTTCACCATTAAGGAAACCATTATAATGACTGTTTTGGGAGAGTTGTAACTGGCTAATGCTGAATGGAGCTCTGGCTAATGTAAATTTTTTCTTAGTGAATGTAAAAATGAGCCGATTTAAATTTACGCTAACCGAATCACTTTTTGTTTCAAAGACACCGGTGTCAAAATTACTACGAAgccaaagttttgttttgttttcttgaaatTCTACTTGTTGCACAAATTACCAATTatacaaatgcttttaaaactgcGCAGATGGGTTTATAGTCTTcctagaaaacattttgttcgGGTTAGCTTGTGCCATTGTAAGAATTGaccaataaatacaataatttatacCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2621 lncRNA downstream 8246 7743495 ~ 7797446 (-) True G1809
TU2585 lncRNA downstream 145160 7656078 ~ 7660532 (-) True G1781
TU2428 lncRNA downstream 489374 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 492794 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 507547 7297494 ~ 7298145 (-) True LOC122341717
TU2672 lncRNA upstream 134814 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 162372 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 256776 8075175 ~ 8077330 (-) False LOC122341751
XR_006250489.1 lncRNA upstream 258302 8076701 ~ 8077387 (-) True LOC122341751
TU2701 lncRNA upstream 320084 8138483 ~ 8167387 (-) True G1868
XM_043240941.1 mRNA downstream 35166 7762381 ~ 7770526 (-) True cplx2l
XM_043240938.1 mRNA downstream 35168 7762381 ~ 7770524 (-) False cplx2l
XM_043240940.1 mRNA downstream 35555 7762381 ~ 7770137 (-) False cplx2l
XM_043240939.1 mRNA downstream 35696 7762381 ~ 7769996 (-) False cplx2l
XM_043241517.1 mRNA downstream 75952 7722102 ~ 7729740 (-) True b4galt1
XM_043247042.1 mRNA upstream 353938 8172337 ~ 8179576 (-) False pcdh18a
XM_043247033.1 mRNA upstream 353938 8172337 ~ 8179575 (-) True pcdh18a
XM_043239735.1 mRNA upstream 654420 8472819 ~ 8490055 (-) False elf2b
XM_043239707.1 mRNA upstream 654420 8472819 ~ 8490055 (-) False elf2b
XM_043239726.1 mRNA upstream 654420 8472819 ~ 8488299 (-) False elf2b
XR_006250550.1 other downstream 510013 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 510059 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 636271 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 678285 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 1264309 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 784901 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 960819 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 976672 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2580788 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 2923523 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile