RNA id: XM_043249238.1


Basic Information

Item Value
RNA id XM_043249238.1
length 2882
RNA type mRNA
GC content 0.40
exon number 14
gene id LOC122351861
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30155709 ~ 30165350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAACGCTTCAGactgtaaatatacaaaaaataattaacaaaggACTACACAAGGAAGAATACAACCAGGATGACAAGAGAAAAATGGCAGGACAGGCTGAAGTCTGTGGAGCAGAGAGCCTCATCTTTTCAGTCTTCTCCTCTGAGCTGTCCGTACAAGCCCCGTCTGTCCCGGCCATGGCAGCCCTCCTCTGTCTGGAGACTCTTCCCACGGCAGAACGCAGCCATCACCTTCACTCAGCACATTAAAcagGACGTGCATTTATTTTCGTTGGAGAAGGAAGGCAGTGATGCTGGACAGAGGATTTTCCTAGTGACCAGCTACAGTGAACTCTGGCATTACTACAGCACTCACAGACAGTCTCTGATGCACTGTTATGAGGTCATTCTGGAAGGGGCCGTCTGCAAACTCTACTTTGACTTAGAGTTCGACAAAGCCTCCAACACGCACCTGGACGGCAAGATGATGGTGACAAAACTAATTCAAtatgtgtgtgagaaGCTCGAGGAGGTTTACGGTCTACGCTGCTCTGCAAAAGATGTCCTTAATCTAGACTCCAGCACCACTGAGAAGTTTAGTCGTCATCTTATCTTCATGCTTCCCAGTGCTGCATTCAAAGACAACTCTCATGTTGgtcGATTTATTCATGATATCCTACATCCTGCTCTAAAAAGCCTTCAGAAAAGcaaaccAGAGGCACCCACAACAGAAGTTTGTCCAAGAGAGAACAGAGCTGATGTGGATGGATCACAGGCCAAGAGAAGAAAGTATGAAGAGAAGGATCTTGACTTTCTGATAGTGAAGAGCAAAAATGGACAAGAACAACTTTTTGTTGACCTGGGGGTCTACACCAAGAACAGAAACTTCCGTCTCTACAAGTCCTCCAAACTTGGAAAGAATGCTGCCTTTTGTGTGGCAGAAGACAACAAGTTTGTCCCAAAGCCCTCCAAGCACACCACAAAAGaagaatgcatatttttaacttCCTTAATCACCAATATCAGTTTCACAGGACAGAGGATTTTGACTTATGATATGCCACAGAAGAGTACAGCAGGATCTCAGTGTCTGTCCCCTCAGAGAGAGCCACATAGCTCTGATCTGTTGGGTGAACAGAAGCTATCTTCTTTTAAAGAGGTGGATGAATTCGTGCTGACACTCTTGTGCAAAGACGGCATTCAAGGAAGCATCCGGAGATGGAACTACTTTGCGTCTGAACAGCTGTTGGTTTATGATATCGAGAAATTCCGCTGGTGCCACAACGTGAAGCGCTTTCACAAGAGCAACAACATCATAATTGTGGTGGATCTCAAAGAAGAAGTGTGGTATCAGAGATGTCATGACCCTGAGTGCAGAAGACAGAACTACAGATCCTCCAGCTTCCCACTGCCTCAAGAAGTCTGCATGAGCCACCTGCTGATGGAGGATGAGGAGGATCAGGCATATTTAACGGATGAACTGGGGAACATCGAGCTTGCCCAGACTTCTGTACCCAGGACTGATTCCTCGGCTCCTCAGGCTGAGAAAGCTGAGGACTGGGGAGAGTGGCCGGATGACCCTGCTTATCTGGAAGCTCTGCAGGAAGTAGAAAGGGCCACTGAAGAGGTACCCGATGAGCTTCTGCTCCAGGCAGTGATCGAGTGTGAATGATGGCCTTGTAACCTAAAAGTCCCTGGATGGAGAATGTCATTATTAACAAACTAGTGCAATACCTGaagttctttatttctttcttttctttctatgcATTAAACTGTAAAGTATATGTTCTTAAATTCTGTTTCctaacaaactgtattttcgaAATGTTCAAAGATAATTTATTtccataaattattttagattatatgaCTTTGGATATTACaagtgtgtaaaatgtattagattttatatacataGATGGATTAATTTGGAAGCACAATACTTATTAGCTTGAGTAGaacattaaaatacactttacaAATTAAACAACAGACAAATTGATCTTGATTGTACCTTTGACCCCTTTTTAAAGAGGTAAAATTTTAACCTACTAAAAAGAAAACTTCAATTTTAATGTAACTCttgctttaaattaaacatttggcATGAAGTAAAATGTGTTGTCAAACGTCATTGTACCTTTtcaaacactttaatttaaaaccaaaaagtgagtaaaaattattgtgaaaagttaaatgaatggaaaattGATTTTGTTACTTATCTGATTCATAGAATCACagtaaaacaatagaaaatgtattagCAAACGTAGCATGATAAACACATGATTTAAAGTCATGTTTCCTCCACTAGAGGGCAGCAGTGGCCTCTTACTGAGCAGAGATGAATGTTTATCACGAAAGGCCAAgcgtgttatttatttctgaaacgCTGCTGTCTGACTGTacatctatcaatctatctatttTCATCTCTTCACTGAAAGAGTGCTTCTGTATTGTTTCCTATACTGAGATGCTTTCCCATATATCccatattaataataaggtactattattaacaataacaacttcattaataataaacctTATAATCTAagacatatgcatatatataatgtatttgtgtgtatatatgtacagcataaacttttttttaaattagtgtcTCAGTGAAGCGAcatgtctttttttacattgtagaaCTCACCTTCACCTGATTTAGTGTCAGGTTTGTAATCTCAGGTCAGTGAGGGACATTCTAAAGCACGTATGAACTGGCTGGCAATCTGTTGTGTTCATTCTGAAATGGTCTTATATCAGGGGGTTAAAAAGATTAcagaaatatgatttaaaaaataggGTCAACCCTCTACAATACCAGAGAAGTacaattttagatttattatttagttaaataatgATTTACTGTG

Function

GO:

id name namespace
GO:0009411 response to UV biological_process
GO:0019985 translesion synthesis biological_process
GO:0006264 mitochondrial DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003896 DNA primase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11657 lncRNA downstream 16587 30119850 ~ 30139122 (-) True G7807
XR_006251809.1 lncRNA downstream 33009 30122289 ~ 30122700 (-) True LOC122351882
TU11653 lncRNA downstream 42826 30107735 ~ 30112883 (-) False G7806
XR_006251747.1 lncRNA downstream 56378 30097858 ~ 30099331 (-) True LOC122351377
TU11590 lncRNA downstream 117750 30032570 ~ 30037959 (-) True G7764
TU11655 lncRNA upstream 6014 30167927 ~ 30173391 (-) False G7806
TU11663 lncRNA upstream 8066 30169979 ~ 30177948 (-) True G7813
TU11654 lncRNA upstream 14252 30176165 ~ 30184609 (-) False G7806
TU11667 lncRNA upstream 34077 30195990 ~ 30243324 (-) True G7817
TU11672 lncRNA upstream 122056 30283969 ~ 30284350 (-) True G7822
XM_043245704.1 mRNA downstream 307329 29845625 ~ 29848380 (-) True LOC122349594
XM_043257071.1 mRNA downstream 323629 29822257 ~ 29832080 (-) False LOC122357555
XM_043247807.1 mRNA upstream 146050 30307963 ~ 30314051 (-) True LOC122350995
XM_043246511.1 mRNA upstream 157168 30319081 ~ 30321983 (-) True LOC122350179
XM_043247390.1 mRNA upstream 161406 30323319 ~ 30324865 (-) True LOC122350704
XM_043245781.1 mRNA upstream 231995 30393908 ~ 30400631 (-) True LOC122349654
XM_043245788.1 mRNA upstream 239292 30401205 ~ 30424282 (-) True LOC122349663
TU11380 other downstream 679371 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 680321 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 682148 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 30288 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 196166 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 196482 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 197907 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 198693 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile