RNA id: XM_043249844.1


Basic Information

Item Value
RNA id XM_043249844.1
length 1147
RNA type mRNA
GC content 0.42
exon number 4
gene id si:ch211-145b13.6
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14804654 ~ 14806247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCTGAAGGGCAGGAAGGAAATGGCAGAGTACAGCCTTGATAAGCTTTCCTGGAGTGTATTTTAGAGTCAGGTTCTGAGCGTTCGCTTTCTTCGTGCTTAACTGATTTCATAAATATCAGATCTTAGGGGACGACTTGAACTAATAGAATGGGACGTTTGAGGTTTCCTGTGATTCCCGTGGTGCTCTTATACACAACGGTATTGCAGACGACTGAAGAAGTGATACAGATGGGCATGTTTCCTGAAGCTGCCGATTACTCCTTCCAGAATTGTCGGAGCAAAATGCTGCAAATGGTCACAGAAAGTGGAGGTCTGCTGCAGACGGAGCTGAACAACAATCCAGATTTCAAAGCTATTTGGCAGGACAGTGCAGCATGCAGCGAGACCATTCCAGGGGGTACGCCTCAGCATGCGGCTGCCCTGAAGAGCTATGCAGACGCTAGTCCTACATTTCTTAAAGAATTCAGAAAGTTGGCTAAGACTAACAAGGGAAGTTCAACGTACAGAGATGAGTTTCCTttcaaatctctttttttcctgctgACAGATGCCGTGCAACTCTTAGGCCAAAACAAATGCTGTACAGTGTACTTCGGTACGGAGAAGGAATATAACACCAAAATCGGTGAGAAAGTGCGTTTTGAGAGTTTTGTTGCAGCAACAGTGGAACATAGTGCTGCAGCTGAAGATGCCAGTGACAGCGATAGCACTGGGACCGTTTTCAACATAATATCCTGTTCTCTGATCTGCTATGaagattataaatgtatttcagaaGAAATTCTGTCAGAGAGAGAATTTTTCATATCACCCAATGAAGTTTTCACAGTGAAGGCAATCACTACTAGAAGTGGTACTGATACCTTTAAAGAGATCACCTTAACACATTCTGACTTTCAAAGTTCTTCTAACTGCAGCAGCCTCGACAGGTTGCCCAAAGAATCTAAAGCGTCGTCTTCAAGTTTCCTGAGTTCCAGTTCCCTGAATCTTATGGCTTCTTTGCTCCCGCTGTACTACTACACACTGACTCTCTAATATACTTTGTTTCCCTTTTCACAAAACTGCAAAGTTAAAGTTACTTGAATGTGACGGTATATCAGTGTTCTTTACCTATTtacataatacaataaattacttttaatgca

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0002520 immune system development biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249238.1 lncRNA downstream 30734 14772740 ~ 14773920 (-) True LOC122336348
XR_006249191.1 lncRNA downstream 31924 14771467 ~ 14772730 (-) True LOC122336242
TU5041 lncRNA downstream 45629 14758120 ~ 14759025 (-) True G3495
TU5038 lncRNA downstream 54480 14749387 ~ 14750174 (-) True G3493
XR_006251961.1 lncRNA downstream 62018 14742108 ~ 14742636 (-) True LOC122353106
TU5052 lncRNA upstream 41778 14848025 ~ 14848576 (-) True G3502
TU5078 lncRNA upstream 91959 14898206 ~ 14918786 (-) False cxxc4
TU5112 lncRNA upstream 195038 15001285 ~ 15004288 (-) True G3546
TU5141 lncRNA upstream 423089 15229336 ~ 15229753 (-) True G3570
TU5143 lncRNA upstream 468637 15274884 ~ 15275311 (-) True G3572
XM_043249859.1 mRNA downstream 800 14796045 ~ 14803854 (-) False kcnip4b
XM_043249855.1 mRNA downstream 800 14796045 ~ 14803854 (-) True kcnip4b
XM_043254604.1 mRNA downstream 11288 14786399 ~ 14793366 (-) False synpo2b
XM_043238117.1 mRNA upstream 1655 14807902 ~ 14812747 (-) False gpank1
XM_043238110.1 mRNA upstream 1655 14807902 ~ 14812744 (-) True gpank1
XM_043240889.1 mRNA upstream 10619 14816866 ~ 14828026 (-) False pdcd4a
XM_043240881.1 mRNA upstream 10619 14816866 ~ 14828025 (-) True pdcd4a
XM_043228273.1 mRNA upstream 56597 14862844 ~ 14865133 (-) True cdkn2a/b
TU5035 other downstream 55679 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 920418 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 962011 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1415329 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1416148 13388434 ~ 13388506 (-) True trnar-ucg_68
TU5081 other upstream 118838 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 214395 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 424292 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1262930 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 3009577 17815824 ~ 17880417 (-) False znf827

Expression Profile