RNA id: XM_043249903.1


Basic Information

Item Value
RNA id XM_043249903.1
length 5584
RNA type mRNA
GC content 0.45
exon number 23
gene id tll1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12161837 ~ 12195683 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCGCACTCCGATCCGCGCTCATTCAAACTTCAGATGGACTGCCTTCACTCTGCACTGACCAGTAAAATGAATTGGATCGCACTCCTGCTGGCTGGCTTGACTTTTTGGGGCAAAGTGTCCTTGCACAGTTGCTTAGATTATGATGACAGTTATGATTATTACGAAGAGGAGAAAACGGAAACGATAGACTACAAGGATCCCTGCAAAGCTGGAGTTCACTGGGGGAATATCGCCTTGGACGAAGAGGACTTGAAAATGTTTCAGATCGATGGAACGATAGAGCTTTCACATCAGTCACATGGGAGACAGGGACACACGTCGGGTGGTCTAGGAGAGCATGATACCAGTAAGAAGAGAGGTTCATTATATCTGTTGCTGGACAGAATACGACGGTTAGGTTTTGAGTCGTGGCCAGTGAACAGCAGTAAAGATGTGTCGAGCTCCAAAGCTGGAGGGAAGAGTGTAAACAGCGGCAGAGGTGTGAAGTCTCGAGTGCCACGTGCTGCCACATCCCGAGCTGAGAAGATCTGGCCAGGTGGCGTCATCCCTTACGTCATAGGAGGCAACTTCACTGGAAGTCAGAGGGCCATGTTAAAACAAGCAATGAGACACTGGGAGAAACAGACATGTGTGACCTTCATCGAGAAAACTGGAGAGAGCTACATCGTCTTCACCTACAGACCCTGcggGTGCTGCTCTTACGTCGGTCGTCGTGGCAATGGTCCCCAGGCAATATCCATTGGGAAGAACTGTGACAAGTTTGGCATTGTGGTTCACGAACTTGGACATGTAATAGGCTTTTGGCATGAGCACACACGACCTGACCGTGACGATCATGTGACCATCATTCGGGACAACATTCAGCCAGGTCAGGAGTATAACTTCATTAAAATGGAACCAGGGGATGTAAACTCTCTTGGTGAGCCATATGATTTTGACAGCATCATGCATTATGCCAGAAACACTTTCTCCAGaGGAATGTTTCTGGACACAATTCTTCCCTCTCGTGATGAGAATGGCATCAGGCCTGCCATTGGTCAGAGAACTAGACTCAGCAAAGGAGATATATCCCAAGCCAAGAAGCTATACAGATGTCCAGCGTGTGGTGAAACACTGCAGGACTCGGTGGGGAATTTCTCATCTCCAGGATATCCTAATGGATACCCATCATATACACACTGTGTATGGAGGATCTCCGTCACACCTGGGGAGAAGATAGTGTTAAACTTCACCACTATGGACCTCTACAAGAGCAGCTTGTGCTGGTATGATTACATTGAGGTTCGTGACGGATACTGGAGGAAAGCACCATTGCTGGGTCGATTTTGTGGTGATAAAATTCCAGAAGTGTTAGTCTCTACCGACAGCCGGATGTGGATTGAATTCCGCAGTAGCAGCAACTGGGTTGGAAAGGGATTCGCTGCAGTTtatgaagCAATATGTGGAGGGGAGATCAGTAAGGACTCTGGGCAGATCCAGTCTCCAAATTATCCAGATGACTATCGTCCATCTAAGGAATGTGTGTGGAGGATCACAGTGTCCGAGGGCTACAGCGTGGGCTTGAGCTTTCAGGTTTTTGAGATCGAGAGGCACGACAGCTGTGCATATGACTACCTAGAAGTTAGAGATGGACTAACTGAGAACAGCCCTCTAATTGGTCGATTCTGTGGCTATGATAAACCTGAAGATATCCGTTCCACCTCTAACACCCTCTGGATGAAATTTGTCTCTGATGGGACGGTTAATAAAGCAGGCTTTGCTGCCAACTTCTTCAAAGAGGAAGATGAATGTCTGAAGCCAGATAATGGGGGCTGCGAACAGAGATGTGTTAACACATTAGGAAGCTTCAAATGTGCCTGTGATCCTGGATACGAACTGGCCCCTGACAAGAAGAGCTGTGAAGctgCATGTGGTGGCTTGCTGACTAAGTTGAACGGCACAATTACTACCCCCGGTTGGCCTAAGGAATACCCTCCTAATAAGAACTGTGTGTGGCAAGTGGTGGCTCCCACTCAGTACCGCATCTCCATGCAGTTTGAAACCTTTGAACTAGAGGGAAACGAGgTGTGCAAGTATGACTATGTTGAATTGCGGAGCGGTTTGTCATCTGACTCGAAGCTTCATGGGAAATACTGTGGTACGGAGGTTCCTGAGGTTATCACCTCCCAGTACAACAATATGCGAATCGAGTTCAAATCTGACAACACAGTCTCCAAGAAAGGCTTCAAGGCTCATTTCTTCTCCGaTAAAGATGAATGTTCAAAGGATAATGGGGGATGCCAGCATGAGTGTATCAACACCATTGGCAGCTACGTGTGCCAGTGCCGCAACGGCTTTATTCTGCATGAGAACAAACATGACTGCAAGGAAGCTGAGTGTGAGCACAAGATTCACAGCACAAGTGGAACGATCAGCAGTCCAAACTGGCCTGACAAATACCCCAGCAGGAAGGAGTGCACATGGGACATCACCGCAACCCCAGGTCACCGCGTCAAGATTTCTTTTAATGAGTTCGAGATTGAGCAGCACCAAGAATGCGCATATGATCACCTGGAGGCCTTTGACGGCGACTCAGACAAGACTCCTATCCTGAGCCGTCTGTGTGGCAGTAAGATTCCAGAACCGCTCATTTCCACGGGAAACAAGATGTACCTGCGCTTCATCTCTGACGCCTCAGTGCAGAGAAAAGGCTTTCAGGCCACTCATTCCACCGAATGTGGCGGTAGGCTGAAAGCAGAAGCACGGCAGAAGAACCTGTATTCTCATGCTCAGTTTGGGGATAATAACTACCCCGGCCACACCGATTGTGAGTGGCTCATAACGGCAGAGTCGGGTTACGGCATCGAGCTCACCTTCACCACATTTGAGGTAGAGGAGGAGGCTGACTGCGGGTACGACTACATTGAACTTTACGATGGCTACGACACTGGAGCCCACAAGCTCGGACGCTTTTGTGGATCTGGGcCTCGTGAGGAGCTTTACTCTGCCGGCGATGCCGTGTTGATTCATTTCCACTCTGATGACACAATCAGTAAGAAAGGCTTCCATATCCGCTACACTAGCACAAAGTTTCAGGAGGCGCTACACACACGCAAGTAACATCTCCCCAAGAGGTGAAAGAGACTCCAGAGAGACTGAATACAGGGATAAAATGTTGCAAGGAGAAACAGACTCCAGAGAACTATTAAGATTGATTAATATCAATCAGAAACCCTGTGGCGATGTGTTTCCTGCATTGGATTTGCCTCTTAATGTTCAGCCACTACGGAAGTGCTGTCGTATTGACCCTAAACACCAATCAGCTGCTCTTATGTGTAGGATAGCTCCGCCCACCGGAGTGGTATCCTGCGCTCTTCTGACTGGACCAGTGTAGAAAATCAACCCCTGgaagaataaaaacatacatagaaACTTCTGTTGGCTCTACAGATTCCAGTTATATATAGAGTTGCACACTGAAAAAGAGACAACGACAATAAGACAACAAGGAActgatattgtgtgtgtgtgtgtgcgcactgGACAGCTCGGACAGTTTGGCTGCTGATGCCACACCACACTGTACCTCAACTAAACTATGTGTGtatgtggatgtgtgtgtttgagagagagaggcctTCAAATACCAGCCTGAactcattcaaatgtttttaaatgtatgtggttgtaattttacatttattctgttAGCTTTATGGCAAAACCCATTCTCGGAAGTGCAAAAGTAAATATGTAGCCCTATTTAACGGTAAGCTTCCTTACATAAATGTAGCCCATTGTTTACGCTGTGATgaaaacaatttgaaaaaagCGACACAACAGTGGGTCTTATTCActaaacacaaaacatgcacGCGCACGAATCTGTGCGTGAAACGCAAACCTTCACACTAAGATTTATCACATGCTCTGGGTGGCCTTATAATCGTGTTGAAACGTTATGAATAGATGTTCGATCTTAAACAGATTTCAGCACATATCATGAAAAGCAGCATTATCAAGTCGAGAGGTTCTTTGTATAACCATATATGTACAGCTGGGTGTCGATCGTGATTGAAATGGTTTTGAGGATGGCACACTTGCTCTAGGATCTTTCTCCACATGCTTTTAAGTGACAAAAGAGAGTAAAGAAAAGGCTGTGTGGATGAAGATGAATTTAATGTGCTTTATGCAAATAACTCGTttaaaaatgctgggttaaGAACAAATTCATGTGCTTAAGAAACAATTCTGTGCTCACAAATTCAATATAATCCCTGCAGTTTCAAGTGAATGAGACCCAGTGTCTTGCGCTTTATTTGTGAAGAGGCCCACAAGGAATCTGCATTGCTGTTACTTTTACTCCACAGAGTTACCCATGCCTTGTGTGTTCACACTTTGCATTATTTGATAATGCTTTCAGCTATCAGTAAGTTTCCATTTCACACAGTATTTTCTGCGGGTTTCTATCGTTTCTCTAAAATGTCAGAAAGCCTGCAGATTCCATCTGGGCCTCCTGAGTTGCAGAAACTAAGTTGTTTGACAGAGGGAACTGATAGAATATTCTCTGCGGAAGAATCTAGTGGTTTTCTCACTCTTCCAGAAGAAGTGAACAATGAACATAATGTGATAAAGCCTTGCATAAGATGTCTGTTACAGCTGTGACAAGCGACTACAACCACCTTAACCCTGTGCGCTTTATATGCACTTAACACAGAAAGACTGTATGAACCGTGTGTTCTTCAATCGTGGAAACGAACCCGTGAGCAGTACCAATGAAGCTGAAAAAACTCACAGTGCGAGGAGATGTTCTCTGTTGCTATATTCCCAATGACAAGTTTTCcctgcttggaaaaaaaaagcaaagtcgCTGTTGAAGGGAATTCCTACGGTGCTATTCAGTGTCTCAAAAACACGACAGGTCCCACAAGGCAATGCTCCAGCCATTCAGTGAATGCGCCGGCGCAATGGAGAGGCAGCGTTGAAATAATGTTGCTCATCTACACAGAAAGAACAAAATACTCACAGCATTGACAGCACTAGTGTTGTGGAGGAACAATTATTGCCTTAGAACCAAAATGTACATTGTTGCACATGATGTTTCTGtagataattgttttttttttgtttttgttttttcaaattattatattttatttgatattaagtTTAAAGAACTTGAACctttatgttaaaaatgaaatttaactGACCTGAAGCCGTCCCTTTCTGtccagttacacacacacacacacacacacacacacacacacacactcgtctgCATATATGCTTATACACGaccatgttcacacacacacaccaactaATGCTACAATAATGCTTTAACGTCAGCAGTAAGAGTGTGTGAACTGTGacgtgtgtgtgcatttattggTCTGTGTGTTACACAGCACAGGTCATGTGACTGTGTTCTGACTCATGTGAGTATTTCTGTATGTGCCAAGTTCCTGTTGATTCCACTCTAGATGATCTATGAGAACTATGACGTatgacaatgtgaaacatgatTTATTCACCTGTTATATCATCAGCCTAATGATGAAGAAGGACTCTTCACTCTCAACAGTGATTAAACTCAT

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0001568 blood vessel development biological_process
GO:0035124 embryonic caudal fin morphogenesis biological_process
GO:0006508 proteolysis biological_process
GO:0001885 endothelial cell development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09608 TLL1; tolloid-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3987 lncRNA downstream 11121 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 63553 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 232841 11927551 ~ 11928996 (-) True G2742
TU3914 lncRNA downstream 251827 11849622 ~ 11910010 (-) False G2690
TU3915 lncRNA downstream 251827 11855220 ~ 11910010 (-) True G2690
TU4090 lncRNA upstream 94146 12289829 ~ 12290106 (-) True G2826
TU4096 lncRNA upstream 139669 12335352 ~ 12336759 (-) True G2829
TU4112 lncRNA upstream 230530 12426213 ~ 12442443 (-) True G2837
TU4113 lncRNA upstream 231484 12427167 ~ 12443813 (-) False LOC122348535
TU4114 lncRNA upstream 240234 12435917 ~ 12441497 (-) True G2839
XM_043240943.1 mRNA downstream 44454 12097929 ~ 12117383 (-) True ugt8
XM_043250940.1 mRNA downstream 66943 11960370 ~ 12094894 (-) True ndst3
XM_043236389.1 mRNA downstream 235015 11923120 ~ 11926822 (-) True mettl14
XM_043247864.1 mRNA downstream 243630 11910750 ~ 11918207 (-) True LOC122351032
XM_043249937.1 mRNA downstream 311182 11847007 ~ 11850655 (-) True grhprb
XM_043236922.1 mRNA upstream 15753 12211436 ~ 12225082 (-) True cpe
XM_043246632.1 mRNA upstream 40522 12236205 ~ 12246905 (-) True klhl2
XM_043236093.1 mRNA upstream 52812 12248495 ~ 12281828 (-) False rapgef2a
XM_043236102.1 mRNA upstream 52812 12248495 ~ 12281827 (-) False rapgef2a
XM_043236106.1 mRNA upstream 52812 12248495 ~ 12281827 (-) False rapgef2a
TU3761 other downstream 649004 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 663479 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1107896 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 1180471 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 1347762 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 146052 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 147766 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 708516 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 708516 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 958803 13154486 ~ 13159246 (-) False smim14

Expression Profile