RNA id: XM_043249916.1


Basic Information

Item Value
RNA id XM_043249916.1
length 2404
RNA type mRNA
GC content 0.44
exon number 3
gene id noctb
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8463831 ~ 8471506 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgcgcgcgtgtccATATGGTCTTCTGACGTCTCTAGCCTGTAATCTCATTCTGTCAGAAGCACTTTAACACACGCAGCCAGTTGTGCATTTCTGTTGAACATTGATCGCACAACCTTACAACAGACGCACACACTGCTGTAACAGACTCAAAATCCAGACCTGTAATCATGGAGGTCGTTGCATGTTCCATGGGCAGCAGCACTAGCAGTCTCTACAGTGCCCTGGCTAAGACCATCAGCAGACCTGCTCTCCCTCTCCCGTGTGACTCCGCTTACAATCCAGGTAGCGATCTGGATCTGGATCAAGACCCGGCGGACCCTTTGGAACTGCTGCGGGAATGTAGAGAGGTTTTGAGGAACCGGCCAGCCCAGCTGCAGAGAGCTTTCGTTCCGACTGCCCATGAAGATGCCAGGCAGACAATCCGAGTTATGCAGTGGAATGTATTAGCACAAGCATTAGGTGAAGGCATGGACAGTTTTGTGCAGTGCCCCATGGATGCTCTAAACTGGGCTGAAAGGAAGTATCTGATCCTGCAGGAGATCCTAACCTACAGACCTGACATCATTTGCCTACAGGAAGTTGACCACTACTTTGACATGTTTCAGCCTGTCCTGGCGAGTTTGGGCTACCAGAGCAGTTTCTGCCCCAAACCGTGGTCTCCATGTCTGGATGTGGAGAACAACAATGGCCCAGACGGCTGTGCTCTGTTCTTCAATCACAAACGCTTCCAGTCACTAAACACAGCACACCTACGACTGTCCGCCATGATGCTGAAGACCAATCAGGTGGCAATCATCGCCACTCTACGCTGCCGAGCGACAGAACGTGCGTTCTGTGTTGCGGTGACGCACCTGAAGGCACGGAGCGGTTGGGAGGTCCTACGCAGCGCGCAGGGCTCCGATCTCCTACGGAACCTACGAAATGTTGCGCAGAGAATCGAGGCCGAAGAAAAAACAGATAGCGACGTCCCCCTGATCGTATGTGGCGATTTTAATGCCGAGCCGTCAGAAGACGTCTACAGGAACTTCGCGACATCTAGTCTGGGATTGGAGAGTGCGTATAAGCGTTTGAGTACAGATGGGAAAAGCGAGCCTCCTTACACGACGTGGAAGATCCGGGCGAGCGGCGAGAGCTGCCACACGCTGGATTACGTGTGGTATTCGCACAGAGTGCTTGATGTTAATGCGGTTCTGGACTTTCCTACAGCAGAACAAATTGGACCCAATAGGCTTCCTTCCTATAACTACCCTTCAGATCACCTCTCCCTCGTCTGTGACTTCTGCTTCAAGGATCCCACGCTCGTTTCCCAGTGATTACAGACATGCTAGTTATTTCGCAAGACGTTTACCAGTCTACAAGTCGAGACTTGTGTTGGCGCAGCATTTctacatattttacattgttCATGACTAATTAACGGTTCGGTCAGTTTATTCCAAAAGggacataaaaatgaaaatgctgtcttCATTTGCTCTGTTTCGCTTTTTtggagatttatttttatttaaaaggacaacGCAGCACAATAAAACCTTCGCGAAGCATAAAAATCACTGTCAAGGTAGTCTGTACTGTACAAAGTACTGTATGTTCATACAATACGATAGTTTAGTGTGAAGTCGACTCAACTGCAATCAAAAGAATCTACAAGAAGTAACTTAAATATTAGTCcgttcctcacacaaagctatagCATGGCTTCAGACGACTTGGAAATATAATCACACTAGAGCTGCACAATTAATCGTTAAATGATTGCGATCTCACTTAAAACAGCCGCgcaatgcagtttttaaatgacagcaatatctttgaaaaaaatcataccGGATCATTCAAATCTGTGTGATTCAAATCGTGACTGTAGAGCAATAACATTTTCTCACATTATTTTGCTTAGTTGAGAATTGTGGGAGAATTGTGATTCTTTActtgagacaaaaaaagaaatatcgaTTCACCATTTATCCGGAATCTTGCAGCTTTAAATCATACTCCGTGTAGTCACGCGGACTATTTTTATGGAGCTCAGCtgtgaaaattgttttatggaaaagagcagcttggacattagctgaaatatcttcctttgtgttccacagaagaaaggaagTCAAAAAGGCGAATAAATGATAGCACAATATTCAGTTTTGCAGGATGTTATTCCTTTAAGCTCTTGTATGTTCCTGACTTTGAGAATGTAGGTTTGAAAGCaaaatgttgacttttttttttattcctaatatatatgatggaaaaaaatcatacttaaaatattttttttgttttattgttggtAATATCATGACGTGTGCGCAAATGAAACTGTTGCATTGTGGTATTTCATATTGAAGAAAATAAAGTATGGTTGGGAGTGTATCAAATTATGCA

Function

GO: NA

KEGG:

id description
K18764 NOCT, CCRN4L; nocturnin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2668 lncRNA upstream 481660 7954711 ~ 7985615 (+) False pcdh10a
TU2551 lncRNA upstream 653624 7812153 ~ 7813651 (+) True G1754
TU2550 lncRNA upstream 655921 7810983 ~ 7811354 (+) True G1753
TU2547 lncRNA upstream 658054 7808303 ~ 7809221 (+) True G1750
TU2549 lncRNA upstream 659261 7807351 ~ 7808014 (+) True G1752
TU2752 lncRNA downstream 54075 8525581 ~ 8578361 (+) True G1902
TU2833 lncRNA downstream 159966 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 224451 8695957 ~ 8697410 (+) True G1968
TU2873 lncRNA downstream 240668 8712174 ~ 8714035 (+) True G1971
TU2880 lncRNA downstream 258551 8730057 ~ 8730394 (+) True G1977
XM_043247758.1 mRNA upstream 482136 7966691 ~ 7985139 (+) True pcdh10a
XM_043247764.1 mRNA upstream 482136 7966692 ~ 7985139 (+) False pcdh10a
XM_043247750.1 mRNA upstream 484463 7966691 ~ 7982812 (+) False pcdh10a
XM_043248903.1 mRNA upstream 645927 7818423 ~ 7821348 (+) False c1h4orf33
XM_043238746.1 mRNA downstream 29168 8500674 ~ 8505353 (+) True LOC122344791
XM_043236617.1 mRNA downstream 34093 8505599 ~ 8566094 (+) True ank2a
XM_043236886.1 mRNA downstream 135319 8606825 ~ 8607785 (+) True cxcl8a
XM_043237640.1 mRNA downstream 151652 8623158 ~ 8634368 (+) True ppp2r2ca
XM_043237605.1 mRNA downstream 171953 8643459 ~ 8654328 (+) True crmp1
unassigned_transcript_3 other upstream 3931 8463272 ~ 8463344 (+) True trnaa-agc_1
unassigned_transcript_2 other upstream 4824 8462379 ~ 8462451 (+) True trnaa-agc
TU2530 other upstream 745850 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 1315055 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 1608707 6846500 ~ 6858568 (+) False LOC122351737
TU2774 other downstream 135322 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 228934 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 299602 8771108 ~ 8778892 (+) False LOC122342651
TU3004 other downstream 563580 9035086 ~ 9035600 (+) True G2063
TU3085 other downstream 936899 9408405 ~ 9412437 (+) True G2125

Expression Profile