RNA id: XM_043250010.1


Basic Information

Item Value
RNA id XM_043250010.1
length 3377
RNA type mRNA
GC content 0.44
exon number 23
gene id camk2d2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8566153 ~ 8598509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGGGAGGGGAGAAGGGGGCGAGGTGCTGTATGCAAACACGTTCAAGAGAGAGATGGCAACGTCAACGCGCATAATGATGAGCCCATGGAACCGTCGGATGTGAAAGCGCTTCTTCCTCCCTTTGGCGATCGAACCCTAGGAGGGACCAGAGGAGACTGACTGCGCTTCCCCGCATCATCCTCTTCCTCGCGCTGCCGATTCCCCATCACAATGGCTCTGACCATCTGCACCAGATTCACGGACGAATATCAGCTTTTTGAGGAGCTCGGAAAGGGCGCCTTCTCTGTCGTGAGGCGATGCGTGAAAATATCATCCGGCCAAGAGTATGCGGCCAAAATCATCAACACAAAGAAGCTGTCAGCCAGGGATCACCAGAAGCTGGAGAGAGAGGCTCGGATTTGCCGTCTCCTGAAGCACCCGAATATTGTTCGACTCCATGACAGCATATCGGAGGAGGGCTTCCATTACCTAGTTTTTGATCTGGTTACTGGAGGTGAGCTGTTTGAAGACATTGTAGCGAGAGAGTACTACAGTGAGGCTGATGCCAGtCACTGCATTCAGCAGATTTTGGAGAGCGTTCATCACTGCCATGTTAATGGGATCGTCCACAGGGATCTGAAgCCTGAGAATTTGCTGTTGGCCAGTAAGATGAAGGGGGCAGCAGTTAAGCTTGCTGACTTTGGTTTGGCCATTGAGGTCCAGGGGGACCAGCAGGCATGGTTTGGTTTTGCTGGTACTCCAGGGTACCTGTCCCCAGAGGTCTTGAGGAAAGATCCTTATGGCAAACCGGTGGACATGTGGGCCTGCGGTGTGATTCTTTACATTCTGCTGGTTGGATATCCACCATTTTGGGATGAAGACCAGCATCGCCTTTATCAGCAGATCAAGGCTGGTGCATATGACTTTCCTTCTCCTGAGTGGGACACAGTGACCCCTGAAGCTAAAGATCTGATTAATAAGATGTTGACTATCAATCCTTCTAAACGCATCACAGCTGCTGAAGCCCTCAAACACCCCTGGatctgtcAACGCTCCACTGTAGCCTCTATGATGCACAGACAGGAAACCGTGGAGTGCTTGAAGAAATTCAACGCCAGAAGGAAACTCAAGGGTGCAATTTTGACCACTCTCCTGGTCACAAGAAACTTCTCAGCAGCCAAGAGCTTGTTGAACAAGAAGCCAGATGGTGTGAAGGTTAACAACAAAACCAACCTAGCCAGCAGCCCCAAAGACACAGGCCCCGCCCCAGCACTGGAGCCACAAACTACCGTGATCCACAACCCAGTGGACAGAAACAAGGAGTCAACAGAGAGTGCCAACACAACTATCGAAGACGAAGACCTTAAAGCCAGACGCTTTGGAAACCTCAGCATTAattcaatctggcaacccgcgGGCCGCCCGCAAAACTCCGAGCCCAAGCAGGCGCCCAACTCCTCGGTGCAGACTTGCCAAGTTATCAATAAAGctcgAAAGCAGGAGATCATAAAGGTGACTGAACAGCTGATTGAATCCATCAACAACGGAGACTTTGAGGCTTACGCAAAGATTTGCGATCCTGGTCTTACTTCCTTTGAGCCTGAAGCTTTGGGAAACCTGGTTGAGGGTCATGACTTCCACAGGTTCTACTTTGAGAACGCACTGTCCAAAGGTAATAAACCTGTACACACTATCCTGCTGAACCCCCATGTGCACCTGATTGGGGAGGATGCAGCATGCATCGCGTATATCCGTCTCACCCAGTACATGGATGGCAGTGGGATGCCACGCACCATGCAGTCGGAGGAGACCCGCGTCTGGCACCGCCGAGATGGCAAGTGGCTGAACATACACTTCCATCGCTCTGGAGCCCCAAGCGTGCCCATCAAttAATGGAATATTAAGCTTCATTTTTTCCCAACTGAGGAGAAACCATCAGCAAAAACCCAACTGTCTGTCAGTCAAGCTGGGGGTGTGTCTTCTAAGCCACACCTGCTTCCCAACAACCACGCCCCTCTCCCCATCCCCCTCAAGGGTCGTTTACATGTTATCGCACATGGACCAGATAGTTCAAACATTTTGCTAAAGGTCATCACCTACACCAAAACCCGTGGGCCATTCGCATATATGGACATTATTAAAAGGagtgtatttttaacattttcttttctgtttctttttttaagctgttttggtatgcattttaaatgtatagaaTATGTAAAGAGAATCACCTTTCCCCAAgtctgtactgtatttttatgtctATTTATGTGTGTGCAATATATCAAATTTTGAAAGATAAGAATGTTAATATTGAGCTTGCTATTGTTCTGGTGATGTACATATGTCGTGATCGTTcagataaaaaaatcataacataaaaatcataaaaaaaaaactaaaaaaaactttaagaaacttttaaaaaatacgtACTTTAAATTCTGGCTTacagctaaattaaaaattttagtAAATGCTGTCCAAAAGCTTTGTTTATATTCGCTAGCTTACAATGTTTGGCTCCTTAAAGATTCTGATTTACTTTGATTTAAGAGAACTGCAGAATACTAATATGGACTGTATGTTTACCTTTATGTCATAGAATAcgagaaaaaaactgaatatcaAAGAGAATGTAGCATATATGATACATCAAACATTGAAAAGCATTGGGTAATGCATGGAGGACTATTTTTTGAATGACCATGCtataatttgtttctttttgctcTCGTTTATGTTGTGTAACACATGATTTCCTTATCAAATTCTTTATTTCTATCAATATCATAAGGATCTGATGTTGTAACGATGATAGCGATTATCATCATTACCACCCAGCATATCTAGAAGTATCACCCTTCTTTCAGATCGATGTAGCTTAATTTTCCTATATTGAGTGGCTGTGAAAATATTATCCTTTGACTTTATATCATGGCTGtatgagaaaaagaaatataagtAGCTTATGAGAAACTACATGTATCATTTTCACACATATTTGTGCTTTTCGTTTATCCCAACATTATTTTCGCCCATGGCAAGAGAAGCGAAATTGAGCCGAGCCTGATTTACAAGCATGCACACTGCCCCTAGTGGCGACTCAGTGTCTGTGCGCCACTCAAATGGAAGATGATGTCATAGAAGGTGATGTCGGAACAGAACGGTCTTCCTTGAGGAAAAACCTCACCACTACTGGACTATGCCAACACCATGCTTTCCGTTTTCTCAGTGTTCCTTTTTCTCTTCTTAAAGACATTTCCTCTGCTGATACTTACAGAACCTCAACGCCAATATGAGGATGTGAACTACATAATTTGTTGCCATGGTGGCGCtagcaaatcaacatatttaatgaaaaatacaataaaggtGTGATATGTACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2796 lncRNA downstream 65976 8497602 ~ 8500177 (-) False mgarpb
TU2794 lncRNA downstream 72873 8492403 ~ 8493280 (-) False mgarpb
XR_006251726.1 lncRNA downstream 117529 8446548 ~ 8448624 (-) True LOC122351284
TU2701 lncRNA downstream 398766 8138483 ~ 8167387 (-) True G1868
XR_006250489.1 lncRNA downstream 488766 8076701 ~ 8077387 (-) True LOC122341751
TU2919 lncRNA upstream 32955 8631464 ~ 8634397 (-) True G2010
TU2929 lncRNA upstream 70904 8669413 ~ 8670804 (-) True G2016
TU2947 lncRNA upstream 97363 8695872 ~ 8697401 (-) True G2033
TU2951 lncRNA upstream 97656 8696165 ~ 8697401 (-) False G2033
TU2954 lncRNA upstream 101920 8700429 ~ 9005360 (-) True G2034
XM_043252454.1 mRNA downstream 65941 8492144 ~ 8500212 (-) False mgarpb
XM_043252378.1 mRNA downstream 65941 8492144 ~ 8500212 (-) True mgarpb
XM_043239735.1 mRNA downstream 76098 8472819 ~ 8490055 (-) False elf2b
XM_043239707.1 mRNA downstream 76098 8472819 ~ 8490055 (-) False elf2b
XM_043239726.1 mRNA downstream 77854 8472819 ~ 8488299 (-) False elf2b
XM_043237586.1 mRNA upstream 10579 8609088 ~ 8622357 (-) True pde5aa
XM_043237594.1 mRNA upstream 10579 8609088 ~ 8622351 (-) False pde5aa
XM_043237575.1 mRNA upstream 36052 8634561 ~ 8642497 (-) True wfs1a
XM_043248211.1 mRNA upstream 75485 8673994 ~ 8676615 (-) True LOC122351261
XM_043240232.1 mRNA upstream 115121 8713630 ~ 8751572 (-) True LOC122345778
XR_006250550.1 other downstream 1270474 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 1270520 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 1396732 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 1438746 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 2024770 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 4791 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 180709 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 196562 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 1800678 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 2143413 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile