RNA id: XM_043250221.1


Basic Information

Item Value
RNA id XM_043250221.1
length 6756
RNA type mRNA
GC content 0.41
exon number 8
gene id lcorl
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13434217 ~ 13451163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCCGGGGGGAAGGCGGACAGAATGGCGACCCAGTGCCGGAGCTCCAGATGCACGGCCGAAAGAAAAGGATTCCGGCGGGAACTCGACTCATGGCGACACAAACTCATCCACTGTGTCGggTTTGAAAGTATACTGGAGGGAATATATGGACCAAGACTGCTCCAAGATCTCAATATATTTGATGAGTGTGAACCGGAGACAGTGGATGATTGGTCCATGAATGCAAACTGCTCTTTTTGCAACCTGCAGCTGGAGAAACTGAATGAACACTCTGCCGTGGCCATGCCTGGCTCGCCACCCCCTGCTGAAACCCCCCCACCTCAGGGCCTGTCCACCTCTGATAAACTCCAGTGCCAAGCAGACCGATTCCTCCACGCTATATTTCGTAAAAAGGAATTCCCTCAGAGCTGTGATACCAGCATACCATTGGTGGCACAGGAGTTGATGCGCAAGATGATTCGGAGGTTTGCCTTAGAGTATGCGTGTAAAAGCCAGGCTCACGAGGGCCTGAATGGTCTAAGTGACACACCTGAGCTTCTCCCTCATCAACAGGACCTTGATGGGCCTCTGGATCTCACCATCAGCCGAGCTTCTCAGGCCCTCCAAGTTGATGAAGTGCTTGACCTCTCCAAGAAAAACACATCAGCAGAAAATGAAACTACTCAAAGAAAGGTTTCAAGTTTCTTAGGGCCAAATGTGGAAGACCGGTCCAGACTGGAGACGGAAGATGGTTCTAAAGCTCCAGTGGTCTGGAAAGTTACTGTGTTGGAGAAGGTCCTGTCTTCGCTTTGTTCCCATCATAGACTGCTCTTCTATCATATTTTAAAGGACATGCAGGAAGAATACAACATCTCCGTAACACTGCGTGATGCTCACAGAAGACAGTTTAAGGCTGAATCTCTCTGTTGTCATGCTGATAAAAAATCACTTAATGAGGCCCCGATACTTTCATTAAGTGACTGCTCAGTAACTGCTGGCATTTGTTGCAGAACAGCTTGTAGGCTTCCAACAATTTCTCCTCTTTGCGTCTGTCTGAGGAACATTCATGGCAATTCCTGCCAAGATACATCTATGGCATGTGTTGGCCAAGATAACTCTTCTAACCCCACTGTTTGTTGTACTCACTCAAAACTACCATCGTGCCATCTTCAGCACAATGGTGATCATACTTACATTTCTCATGTAAGAGGAACTCGAATTACCCATGAGGGTGATTGCAATTACCACAATAGATGTAAAGGAAGCCGTAGCCCCTCCCCACCACCACTATCACCAAAGCCAATGGACCTGGATTGTAAAATGGCTGTCAAGTCCAGTATCTTACAAATTCAGGACTGCAAGTCATTAAACATGGCACCTCCTTCTCTCCTACCTCACAGAACAGAGCATGAAGATACAGCTTTGTACTGTAACACTCCTCTTCGTGTGGGATCTTCGGATGAATGTTGTGAAAAAGTTTTAATGTTGCATACAAATGCAGAAAAGGAGAATGACCACCAGTGTGGGTCTTTCATAGGAGATCTAATGGACAGAGTCACTGAAAAGCTCAGAAGCATCCAACCTTCAGAGAAGGAGCAAAATCTTGGCAGTCAAATCTCCAAGACAGATGACACACATTTGACAGAAATTATAACAACCGTGCTACACAACAGTAGTGACAAAGATTACAACCTTAATGAGCTTTTACAACAGCATGTTGCCACCGAACAGCGATCCCCTCAGACACGTTCCCGCAAGAGACTGGAAACATTAGTTGCTAAGTCACCTGATCTTCCATCATCAAGAAGACAAAGCTTACAAATCAAAAGAGATCTGGCCAGACTTAGTCCATCATGTTTAAAGAGGAATTTAGggtttgagagagagaggtccTTAAAAACTGTTAAAGCTGCACAGCTAACATACTCTCTTGTTGAACAATCTGATAGTAGAAAGTTGGACACAATACCCAGGACAGTGGACTCAAAGCCTATAAAAGATACCTTAGAAAATTCAACCACGCATACACAAATGAAGGAGACAACGAATAAACAAAAGAGCCAAGAAATTCAAcctcaaaatgtatattttgaagaaccacTGCCTCTTGATGAAAGTGCACAATTGCAAGCAAATGCAAAAATTCATAAAGCGAAAAATCTGACCGTTCAAGTTGGAAGAGCCAGACGAAATATTGTACCACCACAGCGTTTCTCATCCTATGTTACTGAGCCAcggaaaatgtattttgcagcCTGTTTTTCAGAAAGTATATTCGCCAAGCATTCCCCTAAGGACAGTACCTCAACAGCTCTTGGTTCTACAGAAGAAATCGCCTGGCCAAGTGATATATGTAATAAACAGCCTCTTCAAAATGAGGATCAACAAGAAGGCTGTGATGTGCCACAATACATAACTTCATTAAAAGAGCCACCATGTGAGCACAAGGATAATGGAAGGAATCCTGATAAAGAGAGTGCAAGAAAAAGGAAACCATGCCAGAATTCTACTTCACCATCAAAAGAACATAAACGCCATAAGACCAACAGTCTAAACACTGACTCGCACAGCCCTACTGAAACCATGTCTAACTTTACTACCACTGAGAGTGGACAAGAAGCTAAAGCAAGCTTGTCTGGACTGAAATATGATAGTCCAATAAAGCTCATGTTTGTTTCCTCTGTGACAGGTGAAGATGGTGTAAAATACACACTCAAAGCAGCTGCCTCAGGCTCAGATTCCCATGGAGAGATGTTTGATCCATGTGTGGAATCCTCATGGGCAGGTAGTGCCATCGATGAACATTTCCAGGATCCAGTCCTTGAATCAGCTCCAGGGAGATCTGTTGAACATGGTGGGAACAAGTATACTTTACCAAAAGTGGTTTCACATGATGCAGTATTGCCAAGTTGTTCAAACAACGAAGATGAACACCAAGAAACACTACCAATTGTACATCAAACATCTCCAGTAAAAAGGCGTCCTGGGCGTCCCAAAAAAATAGGACCACATATTGTGAAGTCTGTGAAACGTCCCATTGGCAGACCTCCAAAACCCAAAACAACAGACTTGTGTTCATCATCTGGTACAACCGGTTCCAGTGCAGTAAATCATAGGACAACAGAAATTTCTGGTAAGGATGATGgaaacaaaaacctaaaaatcaCCATAGTGTATGGAAGATCAAGAAGGGCAAAAAGAGTAGTTTCTGAAGATTTGAGTAATATCTCAGAACAACAACATGTTTTTGAACTATTAAATGGTGGCACGTACAGTGAAACATATTCTGGAAAGACTAGTAGTAGTGATCAGATGCTTAAAGATGACCATTTTGTTATGCCTGTTGAAGACAGGAGATGTATTTCTTCAAGCAGCAACATCAAATGTCAAAGACAGAGTGACACCGCAGTGTCACGAAAGCCAGGAAGACCTCCCAAAGTCAAAATATCTGGTATCTCTGTCACTGTCACCACAGGGTCTCCAAGGCAAAGAAAGATACATATAAAAAGGGACACAAAAGATTCACACCTGCTCAGAAAGAACCTTCTTGTTGAAATTCAACCTTCCAAAGAGCAGAAGACAATCTGCATTCCTACTGACATTGACAAGGATATAGTGGTTGGAGCAAAAGAACATAGTCATTGTACCAGAGGGCAGCTCATACCAGTAAGGCATTCTGTTAGAGAACGGAAACCCTCCATTCACTTGCTTCACTCTGTCGCTACTGCCAGATCCTGCGCATTGGTTCGCAGGTCACGGAAACTACTGCTGAATAAGGTTAGCTGTGAGTCCAGCAAGAATACAAAGAACAGACAAGAGCAAGAGCACCTCCCAAAAAATGCACTTTCCACTAGGACCAAGAATGTCAGTTCCGTACAAGACGTTGTTCGTTTTTCTACCATTTCAATGGACTCAATTTTTTCATCAAATGACGGTTTCAGGTGGTGGCCCGCCTCAGCATCACCTGACACTTTAAATGAACAGTTAGCTAGGAGGATCAGGCTAATGTCCAACACTTGGGTATCAGATGTCCTCGAGGCTAACAAGTCAAGAGAGATTAAATCAGATCTTAAACCAAAAACTTGTGAGAGCCTCAGAGGATCTGCTAAGAAGTCTGCTTCTGCcatcaaaatgctttttgagaAAAACTACAACATGGAGAAGCTCTGTACGTGGTTTATGCAGTCCACAGAAACTCAGTCCCTTGCTATTGTAAAGAAGGCCACTGCAAGAAATCCCAAGGATGTCTTTCACTACAACCTCAGCAGACCAAATTGCAAAGGCAATGTTTGCCCAAGTCCACAGGCAGAGAGACTCAGGAAACATGTCAAGAAATTTGCTAAAGTTGTCCCAAAGAGTCCGTCAATGCACAAACAAGCACAGGAAATGCTGTCCAAGTCAAGGTCACAAgccaagagaaagctttttaataCATCATCATTTAAACCAAGGCATGATGTTAGGCAGCGCATTTCTTGGTCTAGAAGCACATGGATTATCTATAGAACAGCTCTGCTTAGAGCGAGACAGAAGTTTAAAACCAGACCTAGAATAACATTAGAAGTGTTTCACGACCAGATGAGGACAAGGGCTTCAGGTGCTGAGACTCTAGAATCATGGAAAGAAATGCCTAACTTGGTAGGCAAGACATCCAGACCAATCACGAAagttcaaaatgcattaaagctTCTAGTCAAAACTCCACAGAAAATGATTGGGATTGCCAACCTTTCAAAGCAGAACAGAATCAGCTCCAAAGCTTGGAGTCCAGAGTCCCTAAAGGAGTGTAGGGTGTTTCTGAAAAAGATCAACTCCCCAAACACAAAGTCAGTGACAGAGGAATGTAACACTTGCACAGTAAAGCTCTATGATGTCTCTGATCATGAGGAGAATGAGGATGTTTTGGTGGAAGGGACACGTCCCAGTCCAGTTAACTTTCCAGTACAGCTGCACTCATCCCCAAAAAGCCAGAGCAAgggaggaagaaaaagaggCAAACTGAAAAGCTGGAGCACAAGTCCATCTCCCCCAACAAAAATGCTCAGACAATCAAGGAGCAGCAGGGGTGTTCTAGGAGCAAGGTGGTGTGACTTTGTGCTCGGGTCACTGAAATAACTTGGGACCAGTTTTGGGCAAGACATTTTCTTGAACTATCATAAGGTGCCTTTCAACAGTGGTCTGGCTGAGTATCACAAGCATTATGACACGCAACCTCTGCAAGCGTCATGTAGcaaaaaacaactttaagaCACTTGTTGCactatttaaacttattttgtgtttttatgtttgtaaaatgttttatttaccttttaaaaatctttgaattttatttttggtgcaGACCATGAGAAGATCTAGTTACATGAAGGAGAATCAAAGGTTACAAGAGCATTATATTGTTTGGTTTGCCCAAATCTCGTAGCAGAGTTTAACATTAAAGCAAACTTTTATATAATTCTGGAGAAGAcaaatttcatttcactttttcttttacacTTTATAATCTTTTGTGTTGTAAGAGCTCTTTTAAATGGGATTTTTGCgaatatttaagtttttcaactttaatttttaattttttttttcctgaagtcTTCTCATGTGCTGTTAATGTGTCAGACCAAAATTCTCCTCTTAAAATGTACTCTCAATGCATTCTGGAATTTGAAAATGATAGTAGTCTCTCCTCTTTTTGGGTCTTAGTTGATCTCCTCTTATCCTATATTTATGGAAACCTGTGAATTTAGACTGTTTGCCAAGTTGTGTAAAATCATTTAAGCGTTAATTTACATCCAGGTTCATGTTCTCATTGCACTACCAAACCCAAACTGCTCCCGTTCCCGTTTTATTCCTGACTAAAACCATTTTCCATGTACAGTGTATTTGTGGTGCAACGTTTTGTTCTCAGAAAGATGTAAGattctgttttgctttcttttaaattaaaagcttttaagaTGACCCAGAGGCAAATGTTCCACACATTGTTTcttaaatacaaaaacttatacaaatcttaatttgtgatcTATTGCAGTATGTGACACCTACCTCCTGAAATCTACTGGTAAGACATGGTAGATTGGTCTAAACTAGTAACCGTTTTGACCTCTACCTAAATCCATTCTAACTGGTTAAAGCCTGtatgtttagttatttatttaaatactgtgtTCGTTTCCATCTGCTGTTACTAATTTGTGGCCCTGCCCCCCCGAGTATGTAGAAGTCTAAAATTGCCCTATTGTAGCATTGATGTTTATTTAGGTTTCCTGTAACTAGACTGGTTTGCACCACTGCAATACAAGTTTAGTCAGTCAGTCCTCCTTTATATGTATTTAGGTGCATAAAACTAGTTAATTCTATTAGATTTAAACCATTTGTCTGCATACTTGTAAGAGGTGTTTGTTCCAAAACTGCTGAGATTGACAATTTACATCGTGTGCCAACATAGGTTTCCATCAACTGCTCAACCATTCAAACTGCTGGAGTAATCCAAAAACTGTTGCAAAATTGGTGCATTATACCTTTATACCTATGCCAACCATATGCTGGAGTTGAAGCTTGTTATGAGAATTGGCCTTCTGTTTATCGTCTTATTAGTTCTGCCATTTTGAAGTTTTGGCCACTGTAAACTTGTTACCTGGTGCTATATGTTGtacataaacatgcaaattatGTACACACATtgtattttctctgtttttatacTTGCCTTCAAAAGAAGTTGTCTCAGTCATTAGAACAATAAAGGCTCTTGCAAACAGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4440 lncRNA downstream 41750 13392005 ~ 13392467 (-) True G3096
TU4439 lncRNA downstream 42332 13391555 ~ 13391885 (-) True G3095
TU4438 lncRNA downstream 42916 13391065 ~ 13391301 (-) True G3094
TU4437 lncRNA downstream 43872 13390075 ~ 13390345 (-) True G3093
TU4420 lncRNA downstream 120688 13302753 ~ 13313529 (-) True G3080
TU4573 lncRNA upstream 66875 13518038 ~ 13518991 (-) True G3192
TU4572 lncRNA upstream 67290 13518453 ~ 13518991 (-) False G3192
TU4612 lncRNA upstream 332691 13783854 ~ 13786649 (-) True G3211
XR_006251040.1 lncRNA upstream 336268 13787431 ~ 13788918 (-) True LOC122345850
TU4625 lncRNA upstream 374331 13825494 ~ 13878315 (-) True G3222
XM_043238283.1 mRNA downstream 11977 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA downstream 11979 13398841 ~ 13422238 (-) True fam184b
XM_043243582.1 mRNA downstream 244455 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 244598 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 244838 13168159 ~ 13189379 (-) False pds5a
XM_043237014.1 mRNA upstream 137218 13588381 ~ 13781738 (-) True lrba
XM_043240306.1 mRNA upstream 339412 13790575 ~ 13808268 (-) False sh3d19
XM_043240287.1 mRNA upstream 339412 13790575 ~ 13808268 (-) True sh3d19
XM_043240300.1 mRNA upstream 339412 13790575 ~ 13806698 (-) False sh3d19
XM_043240322.1 mRNA upstream 339412 13790575 ~ 13806694 (-) False sh3d19
unassigned_transcript_100 other downstream 44892 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 45711 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 142494 13291296 ~ 13291723 (-) True G3072
unassigned_transcript_98 other downstream 143877 13290268 ~ 13290340 (-) True trnar-ucg_67
unassigned_transcript_97 other downstream 144194 13289951 ~ 13290023 (-) True trnar-ucg_66
TU4632 other upstream 390379 13841542 ~ 13842643 (-) False LOC122350606
TU4627 other upstream 431115 13882278 ~ 13884236 (-) False LOC122350629
TU5035 other upstream 1295666 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 1473922 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 1569479 15020642 ~ 15029620 (-) True G3515

Expression Profile