RNA id: XM_043250304.1


Basic Information

Item Value
RNA id XM_043250304.1
length 3161
RNA type mRNA
GC content 0.44
exon number 21
gene id iqce
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7607639 ~ 7616300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTTGCGCAAGCAATGCGCAGAGCTGACGCACACGAGCACGTTTCATTTGCTGACTATTGTCATGTTAAACATTTTCGGTTGCTAGAcgacaaaaatgcacattacagCCGTGCAGCGAAGAGAGACGCGAAACGACACTGAGCGATATCACTGGGGTGACTCCGTAGCGTTTACACACCATATCGACGTAGGATCTGCTGCTTTTCTTAACGGCGACATCAGGAAACCGCTGCATCTCGGGAACTTCTTAAGACCCCCTATCCGTGTCAACGCTCTCTTATGCTGTTTTATATTAGGATTAATGCTACTCTTTGACATGAGAAAAATAAGATTTCCTGCTGCATCATAATAACCTTCTCGGACATTACAGATCGTACTCTCCGTACTCTGTGAGAAGGTATTATGGTCCTATTGTCTGTAAAAGgtgatgataaaataaaaacaagccaTCACAAAAGCTGCAATGTCTGTAGTAGCTGGAGAACTTGTTACTGAAGAGGAGGTAGAGGATCTGGCAGAGGACAGTCTCTGTAGCAGCTATGTGTCCGACACGGAAAAGAAATCCACAAGAAAGAGAGTTTCAGGCAGACCACCTCCTTCTCCTaggTCACCATACCTGAACAGTGCAAACTTGCATCTGAGGAGAGCTCCAGTAGCATCGTGGAGGACAGTGAAAGGGACACAGCTCCAAAACTATAAAACCTCTCCGGCTGGTACACCGAAGGACGTCTGGCTGCACTTACAGAATGATGGACATGGGACATTGTCAAAGTCTCCAAAAGGTGCAGATTACAGTGTCACACAGACCAGCGTCTCAGTGACCAGCACACCCGAATACTTGAAGGAGGCCTTAGGAATGAAAAAGCCAAAATATTCGCGCTCTGCTTCCAACGGTTACGTTCCAGGGACGCCGGACTACAAAGATAAGGAGGAAATGTATGATGAAATAATTGATCTAAAAAAGACCATCCAGTCCCAAAAGACTGAATCGGACAAGTTGAAAGCCAAGCTGCGGCGCCTTGGAGAAGAAAGCGcgaaaaaagacagacagattgaACAGCTGTTGGATCCAGTGAAGGACCCAGAGTATGCTAGAGGTTTAGTGGACAGAAAGACTGATCCTAGATCCATCATTAATGGGCTGAAACAGAGGGTTCTACGATTGGAGCAGCAgtgcaaagaaaaagagaacGCCTTAAGTCAGCTTCAGAGTGACCTCAAAACTACTAACATGCAGGAAATGAAAATCACTGTGGAAACCTACTTCGAAGAggttcAAAGATTGCAAGCACTTTTAGAGTCAGCTGAAAGAAGTAATAAGGCAGAGAGCAAAAACATCAGGCGGCAGAACAAGACCCTTAGTGCAACGGTTCTGAAACTCACAAACACTGTTCAACACCTGGAGAACGAGAACCAGGAGCTCAAAAAAGAATTGACATTGGAAGAGATGAACATGATGGACAGCCCTGCGTGCCGAGCCAAGGgCTATATGGATTGGAGCAAACAGAGACTCGTGCGCAGAATTCTGGAGCTTGAAAAGAGAGTTGAGCAGATGAAGAATCTTCAGATCACTAAAGTATCAGACTTACAGAAGAGCCCGGACATTAAAGGCACCGAGTCAGAATCGTCCAATCAAAGGGAGTCTGTCAACACAGAGATGGAGCCTTCTGTGATTAAAGAGGATGATGTGCATTTGAGCGAAGCAGTTACGAAGcttggagaagaaaaaaaggaactaCAGGAAAAACTAGCCCAAAGAGAgGAGGAGATAAATCAGTTGTCTGCTGAGAAGGATAAGAGCCTGAAAGATTTGGAAAACATGCTGAAGGAACAAATCAGAGAGCATGAGGGACTGATGCAAACACACAGGCAAGAGATGGATGCACTGACCATAgaaatcagctgtttgaaagaTAAGTTAGAGGAGGAGAGAACACTCAGATTAGCACAAGATTCAAGTCGGGTTCGGGGCGGTTCTTTGTCATTAACGTTCACAGAACCGATGCCGATGGAGAAGAGCAGAGCAGCTAAGATCATCCAGACTCAGTGGCGCTCACACCGAACACGGGATCTAGTTCTTTTACAGTCCTGTCTCAGAGGACATCTTATCAGGCAGAGGCAGACTCGAGCAGACCCAAGAACTGTCCCTGCTGCCATGAGCCAATCGGGAATGAACGCTCAGACTgtacaggaagaggaagtgacTCTGCTGCAGTCTGCTTTGAGGGCTCATCTCAAACGCAGCGCTCTGATTATAGACAGATCTTCTGCAGAGACACAGTCTGCGTCTTCCACACAACAGAGAAAGCCGTATCTCTCCACTCCTCCACTGCTGCCCAAAGGCTGCTCACAGGCCGTGTTTACCAACAAAATGCAAACCTCAGACCTGAAGATTCACCAACAGCAACCAGCCGATGAATTTCCAAACACCATTGATTCGGATGACTCCGATGACATCATTGTGTCTCCTTCAAAGCCgctgagaaaaagagaaaaatgctgAAGTCCATGCTGTTTGGACCAGTTTTTTCTCTCTTACCTTGAAACACACACTATTACCTGAGCAacccataaaatgtaattgactGTATGTGGGCAATAATGACAATATACAGAGAGGAACTTGAATCACGGATGATTTATCCATGATTCACATTTTTGGACTTCTAAGAACCAAGCCTTCAAATAAGGGACAAATTTCAGAAGATGTGTCTTCACACTCCAAAAGTGCCTTGTGTTGAATGATCATTTTTACGAGGATCAGGGATTTAATATTCTTCATTTATCTTTCATTGTAGATCAATAAACATGTTACTTTAGGCAGGATATTGTATAAAGCATATTTAAGCCATCGTGCACATTTAAGGTACACTCTGACTGATACAAAAAGTACTGTGAATCTGATGTATGCTGGATGAGACGCTTTTGTTCCgattggagagaaaaaaagacagtaaaTACTGTTTCACTTAAATGTTGCCAGTGTGTTACGTTATTATAGGTGTATCTGTGTTGAACCAACAATCGCACTGAAAATGTGatgctgtttttaatgtcttttaatgtAAAAGATTTTGCTCAAagagcttgtttttgttttttgtgccaTTGTTCTGGAATTTGTTAGAGatatgtttattaaaacctgtttttctctG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428 lncRNA downstream 291321 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 294741 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 309494 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 437617 7167577 ~ 7170022 (-) True G1642
TU2398 lncRNA downstream 442918 7162323 ~ 7164721 (-) False G1642
TU2585 lncRNA upstream 39784 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 127201 7743495 ~ 7797446 (-) True G1809
TU2672 lncRNA upstream 336919 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 364477 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 458881 8075175 ~ 8077330 (-) False LOC122341751
XM_043244596.1 mRNA downstream 572 7578940 ~ 7607067 (-) True ttyh3b
XM_043234143.1 mRNA downstream 30170 7573728 ~ 7577469 (-) True zmp:0000001069
XM_043246607.1 mRNA downstream 67279 7533249 ~ 7540360 (-) False brat1
XM_043240125.1 mRNA upstream 7812 7624106 ~ 7648594 (-) False grk4
XM_043240119.1 mRNA upstream 7812 7624106 ~ 7648592 (-) True grk4
XM_043237392.1 mRNA upstream 67805 7684099 ~ 7686855 (-) True pla2g12a
XM_043249867.1 mRNA upstream 90591 7706885 ~ 7717325 (-) True LOC122352459
XM_043241517.1 mRNA upstream 105808 7722102 ~ 7729740 (-) True b4galt1
XR_006250550.1 other downstream 311960 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 312006 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 438218 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 480232 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 1066256 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 987006 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1162924 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1178777 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2782893 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 3125628 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile