RNA id: XM_043250498.1


Basic Information

Item Value
RNA id XM_043250498.1
length 2753
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC122352815
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27794470 ~ 27803049 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggagagggaagtctgggcatccctgcttagactgttgcccccgcgacccggccccggataagcggaagaaaaagaagaagaagaagaagaagaagaagggtTTGTATGAAATTTGGCATGTTTTGTCTAGAGCAACTTCTGGCAACAAGAAGTAGGCGGAAATTTTCATGATTTCATCATTTCCATGAGCTGCCTGCTGTGAGCAGTATATGCAATATCTTGTTATATTTAACCTGATTGAGTAAATAAGGATGTCTTTCAAGCCGCACAGATCCTTGCAGACgtatttctgtttaaatgatGCATATGACTAATCCATTGTTGCTtggaataaattataattttagaacTTTCAGGCCTATCTCTGTTATTCAAGTATATAAATAGCACTGGTGTTGGTTGGTTGGTACTTCATGTTCAGTGATGTTTAGTGTGAGTGACTGTATGTCTCACTATAACTTCTGCCATCCTCTCTCTGCTCTGATGTGGACACGTAAATGCATTGAATAACTggctaaaaatatgttttatagcTAAACGTCTTGATTGATCTTATATGTAGATATtgcacatacatgtatacgTGCCACAAGAAACACCCTCACAGCcactgttgtattttttttactattacttATGTCACTGCAATTAATCACTAGAAGctaaaagaaggggaaatgacGTGGTAATGACATCATTCTGGTTATAAACCTTCCTTATTTTTCTTCATGTCTCATTTGGTGTCAACTGATGAGCTGTCCTCTGCTACGATATCAGTCAGAATGGCtcttcttttcttcattttttctgtcatgatttacGGGGTTTCTAGTGATAGTGATTTTGAAGTGGAGTACTCTTCTTCACACATTTGTGCACTAATGAACTCATCAGTGacaataaaatgcacttatcAAAAGCCTGATAGACATCTGATTTGGAAAACATTCTGGACCAAAGGACCTATAATAAAGAATGCAGAGCCTCCAGATCTGTCTGAAGACCCTGAATACAGTCAGAGATTTAAGTATCTGGGAGATAAAAAGAAGAACTGCACCATGAGACTgagtcatgtgacacagaaagaTTCACACAAGTACTATTTCAGATTCATCACTGATAAACCTGGTGGAAAATGGATTGGTCGTTCAGGAGTGACTCTTACTGTGACAGaTCTTCAGGTGGAGTCTcctgagagagtgacagagggAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCGCTCTGACTGACAGAGCAACATTCATCTGGTACAGAAACTCACAGCCATTAActgagagaagagacagaaacagactCCTGCTGCAGTCAGTCAGAAGAGAGGATGCAGGCAGATATAGCTGTGCTGTACAAGAACGCAATCACTATCTCAGATCACCTGATGTTCAGCTTAATGTCACATaCCCACCAAGGATCGTCTCAGTGTCCATCAGTCCATCTGAAATagtggagggagattcagtgactctgatctgcagcagtgattcaaacccacctgcagaAATCAGCTGGATTAAAGGAGGAACAACTGTAGGATCTGGAAGAATCTACAACATCTCAAAGATCAGATCTGATCACAGTGGAGAATACAAGTGCAGGTCCAGAAATGAACATGGAGAGAAATACTCTGAAGCTGTGACTTTAAACGTCATGTACCCTCCCAGGAACGTCTCAGTGTTCATGAATGGATCTGGTGAAGTAGTGGAGGAagattcagtgactctgatctgcagcagtgattcaaacccacctgcTCTGAACTTCTTCTGGTTTAAGGAGAATCAAAGCTCATCTGTTGGATCTGGACAGAGTTTCAGTGCACTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCAACACGGATCTCAGAGATCAGACGCTGTTTCTGTCACTGTTAAAGAAAGAGGTAAAGCAGTCCTGTACGCAGCTGTAGCGTTCGCAACCGGATGTGGAGTTTTACTCCTTATCTTCATCCTAGTGCTCGCAAGGAAGGCAAAGGGCTCTTCTTCAGACGTCAGACAGAAGCAGGTTCAACAAGCTTCCAGCTCTGAAGATGACGGGCTGTATGACAGAGTTACTCCCAACACACCCCGAGCAGATCCCGCTGCGGGACAGGCTACAAATATAACGTACTCAACCGTCCAACATGTcgcaaaaattaaaaccatctACGAGAATATTAGAGTGCACCATACTGACTCTGCTGCGAGATCCGATACGATGGAGGGTACCTCAGTGGTTTACAGCAGAGCCAAGTGATCCAGGACCCTTCGCGGGGATTGAAAATGACGCTGGGCTCCAGCTGAGTGTAAATATATAGTAGCTGCAGCTTTGAATCAGATGTTTCTATGTGTGTCGAGACGTTTCTCCCTGTCAGTCGTTGAACAGGAAGCACTGATCAGACGCATTGGTACAGCGTGGTGGTTATTTACATCATTGCTTTGAGACTGTGGTTTGTGATTTGAGAAGTTATCATCCACCGCTAGCCGTATGCATACGCCTGTGgacacattttctgttttgtaacGTTTCCGAAGTTTTGCGTAATTTTCCATAAATAGAAGTTTGTTTTAGCCTACACGTCttattcactctttttttttcatgattcatAAAACAATGTTTGATGTTTTGACATCGAATAAATTCATGCATGTTTAAAGTACTGgtctattttatgttttaaataaagtttatatttGTACGTTTTTGGCGATGTTCTATTAA

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10424 lncRNA downstream 49175 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 50513 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 146184 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 147745 27646023 ~ 27646725 (-) True G7012
TU10258 lncRNA downstream 198626 27593721 ~ 27595844 (-) True G7010
TU10488 lncRNA upstream 40629 27843678 ~ 28010247 (-) True G7138
TU10490 lncRNA upstream 44666 27847715 ~ 27848178 (-) True G7139
TU10493 lncRNA upstream 88852 27891901 ~ 28073544 (-) False LOC122349330
TU10456 lncRNA upstream 121365 27924414 ~ 27971499 (-) True G7127
TU10421 lncRNA upstream 131932 27934981 ~ 27939452 (-) True G7105
XM_043250537.1 mRNA downstream 29464 27759218 ~ 27765006 (-) False LOC122352823
XM_043250528.1 mRNA downstream 29464 27759218 ~ 27765006 (-) False LOC122352823
XM_043250551.1 mRNA downstream 29464 27759218 ~ 27765006 (-) False LOC122352823
XM_043250570.1 mRNA downstream 29464 27759218 ~ 27765006 (-) False LOC122352823
XM_043250561.1 mRNA downstream 29464 27759218 ~ 27765006 (-) False LOC122352823
XM_043245253.1 mRNA upstream 84770 27887819 ~ 27890576 (-) True LOC122349272
XM_043245266.1 mRNA upstream 137694 27940743 ~ 27942269 (-) True LOC122349282
XM_043250806.1 mRNA upstream 172231 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 175629 27978678 ~ 27986215 (-) True LOC122352779
XM_043250640.1 mRNA upstream 193362 27996411 ~ 27997642 (-) True LOC122352890
XR_006250838.1 other downstream 539403 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 591903 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 991545 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 991545 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1376591 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 271599 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 441079 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 587990 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 603133 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 720656 28523705 ~ 28525551 (-) True G7527

Expression Profile