RNA id: XM_043250561.1


Basic Information

Item Value
RNA id XM_043250561.1
length 4130
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122352823
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27759218 ~ 27765006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTGATCAACACTTACagtcataaaacacaaacatctttCAACACAGTCTTCTGAGAAAATAGGCCACACATCTTATACATGTTAATGATGTGTTAATACACCGAtgttcagccaatcagaagctcCGAAGAGTGAGAAAGCCCCTCCTCTATATATAAGCTCACTAACAAGTAACTAATGATCATGTTCTGTGAAGAACTAGTGGATATTTTCATACACAAGCACATGCACATCTCATCTTCCTGTTTCTTTAACATAGAAATCTGCCCAGAGTAACTCGTCATGGGTCTTTGATAATAAACTTTAGTATATGTATAGAAGTATGAGTTCATCCCACAGCTCGTGAAGGTCATCAGATCAACAGAAATAGAGCGACTGCACTTTATCTTTACTGACTTTATGCGGTTAACACGGGTTGTTTAAAGCTCATCAATGGAAACATTGCTGTCCCTCCCTCATCAAGAGAACAACATCgctcaaataaaactaaaatcactgtaatatatttattcagtatgTTTGGAAAACTGGATTGTGTAGCCAGACATCTTGCTGGATGTTTCcccttctgaaaaaaaacagcatatgctgaaGAATCACGATAATTGTGACGGTTAGTTAATGTTTAAGTTAGAGATTATTGCACACAAGAAGTTTACTATTAGTATACTTCTTTAAAACTAATCCAGGAAAGTATACTTTTAGTCTGCTTTTTATGCACTTCTCAAAAATAGTCTTTATGCATGTCCCAGAAATGTACTTAACGTAACATCCAGCCGGCAGAGGAAGCCCTCGCCTGAGTATGAGCCATGcttccacttcctgtttgaagCCCTCCATGTGTTCAAAGGCACCCCGTTCTCTCCGGTTCTTTCGGCCTGTTTCTCTGATTACTGGTCTCCTGGATTGCCTCTACTGCTACTGGTCTGTTAGGACTGCGATGCTGGTTTGGACCGGTCGCTCACTCGGCCCTTTCGGACAGAAAGCATATGATAATCTGCCACTTTAAGATCTGCTTTAGCACTGCACAAACATTTCCTGTTTCAAGCTTAGAAGCAACTAAACCAAACGCTGACCACAGTTTTGGTGGTTCTTCCGTGATGTCGATGGTTAACAGGAAGCGTTCACGCTCAGTCTCTTAATTATGTCATTCACTTTAACTCTTTGAGGActtaatatttgtttgtgtcttgAAAGGAATGACTCGGTTCCTCCTCTGGTGAAATCAGCCGCTGAGTTCAAGACTGGAACAAACATACTGCAGGACTTTCCTGGATTTAAGTATGACTTaaagtatacttaaaagtaAAGTATATACTTTTGATTTTGACGTGATCATCCATACAGCAGTGACCATCAGAGCTAAGTTAACTCTGTATTTTTATTCCAGTATTCTTGTATTTGATGAAGCCCACATGGCTTTTGATTACTTCATGAGTGCCAGACGAGGACGTATGAAGACGTTTCTGTTTCCAGATCTTACAGATAGTTGTCTCCCAGCCAAGTATTGTCCTAACAACCCCATGAATCAGTGGAAAGCTCATCTCTTCGTGTAGTTTTAGGTCTGGATGTAAAGAGCACACTAAGGGGTGCTCAGGGATCTCCACGGTCTTAAAACATCTCTGGAACGTTTGATTTTTGACTTAAAGCACGGTTATTTAGCATTTTGGGGGACTAGGGAAGTAAATagggaaataaattatatttcgatgttgtattaaatattatatattattataaagttcTTGTCAATTATTATTCCCATTATTATACTCATTTTTCACAATATGATGCCCTATAAACACATTAGCATGCAAATTAGATTTAGTTCATAGGTGCAACTTATACAACAAGATCAAggagaaatgagaaaaagaatgaatcatttttttttgagtcatatttatttatttttaaactctcACCTGTGCAGACCTGCCTGCATCTGTCCTCAACTGCtcctgtttacacacacacacacacacacacacactcgaccAGTCGCATTCTGATCATTCCAGCCTGtcatcacacagacacacaccaccTCTGTTGATTTCCACTAAAACGCGATCGAGTCCTAACCTTTCTCTCTTCAGCGATGGAGGCCTGTGCGCGTGCACTCTTCACTTCTCAGCTTCAGACGACCTCTTACGACCTCACATTCGAGCGCGTGAACGCCGTCGTGTCCTTCACACGTGACCTCAGCAGACAGGTAGAGCCGGTCAGGTGACCCAGACACCTGTCCCGGCAGATAAAGCAGCCTGTCCCTAACTCCACGCgtgatgtgtgtgtaaatcaGCCAACGTTTATCACGACAAACGTTTCTGAAGAACCCAGGACCAGAACTAAAGCGTGCTCTGAACGAGGAACACGAGATAAGACGACTGCATGCAAATCTGTCCACATCTGATTCAGACTCTTCACCTCAGGAGAGAGATTCACGACCGCTTTAAGCGTTTATTCAAACGACAGACTCAACTTTAGAGACGGAGCTGTTATTCAAACGAGCCGCTGAAGGAAAAGCACATCAGGGATGATCCTGCTCCGGTGTTTTGTAGATTAAATGATTTGTGCTCGTATGAACGGATCAAAAGTGAGAGAGATATAACTGAGGAGTCAACCATCATCCTTCTCTACAATCGTAGGATTATCCAGCGTGTCTCCGGTGCTTTCTCCAGCGCGATGGACATCCCTGAAAAAGAGCGCAAACCGAAGAAGCCTCACTACGTTCCTCGCCCGCCGGGCAAGCCCTTCAGATACCAGTGCTTCCAGTGTCCCTTCACCTGCAACCAGAAGTCCCACCTGTTCAACCACATGAAGTACAACCTGTGCCACGTCTCCGTCTCCGTCAGCTCCGGCTCGGCTCCGGAGGACCCCGGCGACCCGGCCCCGTCTCCAGACGTCTGCCAGGAGACCTCACCTCCCGTGTGCAAGCCCGAGGTGGTCCGTCCTCGGGTTCCCGGGCTCCTCTGGAGGCCCCCGGCCGCGCTCCAGACCCAGGCGCTCCTGCAGGAGAGAGCCGAGGGCTTCCTCTATCACTCCCTCGCTGCTCCGGGAGGCTTTCTCCCGCTGTACCCTCACTATCAGCCGTACGTCGTCGGGCTGTGTCCTCAGATGCTGTTCCCGTGGACGGAGGAGTGTCTGAGGTACTGCTGCAGGATCCCGGCTCCGGAGCCGTACTCTGTGATGGACGCGTATCCTGCGTATGATCCGTACGCGCTCGTCGTGAACCTGAAGGAGAGTCCGGTGATGGGATGCTCCGCTGCCGCGTCACCTAACAGACCGGACCCTTCCCATAATTACCAGCTGACACCAGATGAGAGGGGTGGAGCACCAgctagccaatcagaagagaggggcggggccACACCAGCACAAGCGGTCAGGACTCTGCCAGAAAGGGCCTCACCTGCTTCCAGAGAGATGGAGCGAGGCGGAGATGACAGTAAAAATACTTCTGATACTCTGCTTCCTCTCAACCTCTCCAGGGGAGACGCTCCTCTGAATCTGTCTGTGACTCGATCAGACACCCAATCAGCGAGCAGCCTGATGACTGAGGGGATTGTGGGTAGAGTGACATCACAAGAGGACCACCATTTGCCCGTGGAGAAAAGCGCTGCGTTTGCTCTCTGTCAGCTGGCTCAGTCCGGCGTCACACACCTGAACAGAAGCATCACTTACTCTCCATCCAGAGTCTGTCAGGAGCAAGAAACAAACCCTTCTTGGGTCCGGAGTCCAGCGCGTGACGCCAAATCAGGTGTAGACGCAGAAGACTCCGCCCCTTCCTCTGACGCTGCAGAGGTCTCCGCCCCCTCGTTACATGTTCTGCATAAAATACGGacaaagaaatacagaaaaagcagCCTGAAGAGAAAACAGACAGGCAGCCAAAGAAAATACAATCTGAGGAAGAGATTTAGtgtcagaaataaataaactcttttaTAGCTAATGAAGTTTAAACGTTTCAGGGAAACTCAGCTCTTATAAACTATCGTGTGAAGTATGGAATcatgtatttatacttttttttactgctacAATAATAATGTCCTTGCATTGTCTTCGTACTTTTCTGGTTGCAGGTTTTCATAcgtgcatgcaaataaaaaatggtcAAACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10424 lncRNA downstream 13923 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 15261 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 110932 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 112493 27646023 ~ 27646725 (-) True G7012
TU10258 lncRNA downstream 163374 27593721 ~ 27595844 (-) True G7010
TU10451 lncRNA upstream 16107 27781113 ~ 27961298 (-) True G7125
TU10461 lncRNA upstream 25795 27790801 ~ 27972210 (-) True G7128
TU10488 lncRNA upstream 78672 27843678 ~ 28010247 (-) True G7138
TU10490 lncRNA upstream 82709 27847715 ~ 27848178 (-) True G7139
TU10493 lncRNA upstream 126895 27891901 ~ 28073544 (-) False LOC122349330
XM_043250613.1 mRNA downstream 32316 27724178 ~ 27726902 (-) True si:dkey-27j5.5
XM_043228661.1 mRNA downstream 125444 27604178 ~ 27633774 (-) True gcgrb
XM_043238102.1 mRNA downstream 317456 27438436 ~ 27441762 (-) False LOC122344130
XM_043238101.1 mRNA downstream 318218 27438436 ~ 27441000 (-) True LOC122344130
XM_043238106.1 mRNA downstream 320939 27431730 ~ 27438279 (-) True LOC122344204
XM_043250498.1 mRNA upstream 29464 27794470 ~ 27803049 (-) True LOC122352815
XM_043245253.1 mRNA upstream 122813 27887819 ~ 27890576 (-) True LOC122349272
XM_043245266.1 mRNA upstream 175737 27940743 ~ 27942269 (-) True LOC122349282
XM_043250806.1 mRNA upstream 210274 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 213672 27978678 ~ 27986215 (-) True LOC122352779
XR_006250838.1 other downstream 504151 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 556651 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 956293 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 956293 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1341339 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 309642 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 479122 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 626033 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 641176 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 758699 28523705 ~ 28525551 (-) True G7527

Expression Profile