RNA id: XM_043250940.1


Basic Information

Item Value
RNA id XM_043250940.1
length 4552
RNA type mRNA
GC content 0.49
exon number 17
gene id ndst3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11960370 ~ 12094894 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGAGTACGAAGCCGTAAGATACTCTGCAAATGCCGCGTGGtccgtttcattattattattattattatttttatttttcaaagcggAAAAACCTTCAAGGGGGCGATAGAGCCATACAATCAAATATTAAACCGGATGCTCGAAAAACGAGCCCCCTGGCGTGTTTCATGTTAAGACGGAAGCGTTGGAGTTCAGgtGGCCTCATAAGACTAGAGTCGTGAGTCATTCTCTCTGTGCTGACCACAGGCCATTCAGATGGGCTGATGATAAAGTCTGGAGGTGTCTGGAGAGGAGAGgtgaacttttGGGTTTTTCCAAATGGAACACTTACATGTCTGGAGTTCGGTTCTAACCTAAGTTGTGAATTCAAGATGGCTGCTCCCTACGTGAAAAGTGAGCTAAAGCGCAGAGAGCGGCAGCAGCGGCACTATTCAGTCACTGGTGACAGTGGAGGGGAGTCGTACGTCTCAGCGCTCCTCTCGGGATATTCTCTTCAGTTCGTCTTTTGAGCGCTCCTCCCGTCTCCAGCCCCGTCTCTCCTCCCGTCTCCAGTCCCGTCTCTCCTCCCGTCTCCCCCGCGCTCCTTTAATCCGTGTCGcagtgagagagaaagggagaaagGGGAAGAGGGCGCGGAGAGAATAGCGAACCGGTCCCCGCATCATTCCAGATGGCTGCCTCTGAATCAGCGGATGAGATTGGGCTCTCGGGTTCAGAGCTGTGAGGAGCTGGTGTTCCGGAGAGAGAGGCGGCTCTGGTCTGACAAGCTTCCCGCTCGGCAGTGCCTCGGGTTCGGCTCAAGGATTGTTGGCGGTCAGGAGGAATCTCAGGACATGGAGGGTTGCTAGTTGGATGAGGATTCGTTTAAGGAGCAGCTGAGAGTGTTGTGTCACAAAACTCTTTCGGTGGCTTGTCTTGGAAGCGAATTTGCCAGTTTTGTGAGATGGTCACATGACTGCAGCATGATTACCAAAAAAGCCAATTTGCAGCTTTAGCCCGCCTCAGCGAACAATCAGAGACTCCCACCCACACGCACTCCCACACATGTGCGCCGTTTGCCATGAATCTGGCCACCAAGCTGCGGAGGAATCTGAGGAGGCTGGTCATCCTCCTCGCCACCTTCTGTATGGTCAGCGTTTTAGTCTCCGCCTACTACCTTTACACAGGCTCCACCCAAGAACTGGACCTTGCGGACCGCGCTGTGGGTCCGGACTGTGCCGACCTCCGGGCGCTCCCTTTCCGACAGTCAGAGCCTCGGACGCCTAAACCGATCGATCCGTCACGTAAGGATCCGGTGGTGTTGGTATTTGTAGAGAGTCAGTATTCTCAGCTGGGACAGGACATCATCGCCATTTTAGAATCCAACCAATTTCGTTACCATGCCGAAATTGCGCCAGGCAAGGGTGACATCCCGCCTCTAACGCACAAAGGCCGTGGACGCTACGCACTGGTCATCTACGAGAACCTTCTCAAATATGTCGGCATGGACGCATGGAACCGTGACCTTCTGGATAAATACTGTGCTGAATACAGCGTCGGAGTCATTGCGTTTCATCGAGCAAGTGAAAACTCCCAGCCTGCGCTGCAGCTTAGGGGCTTCCCTTTGACCTTGCGAACAAATGTTGCACTTCGAGACTGCTGCGTGAACCCACGCTCGCCTCTGCTTTACATAACGCGGGCGGAAGTGGATCGTGGCCACTTACCCGGAGAGGACTGGACTGTGTTTCAGTTCAACCATTCCACGTATGAACCAGTCCTATTGGCTAAAACCCGGCCCAGTGAGAGTGGAGCGGCCCAGGTCATAACTGGTCCCCAGGGTCTCCATGCCACCGTGGTGCAGGACTTGGGCCTGTACGATGGGGTGCAGCGTGTGCTGTTCGGACATGGGCTGAGCTACTGGTTACACAGACTTATATTGGTGGATGCCATCGCTTATCTCACAGGCAGGAAGCTGTCACGATCTCTGGAACGTTACATCCTGGTTGACATAGATGATATTTTCGTGGGGAAGAAAGGGACAAGGATGAACGTGAATGACGTGAAgGCTCTTCTGGAAACACAGAACATGTTGAGGTCGTACATTTCTAACTTCACCTTTAACCTGGGATTTTCGGGGAAATTCTTCCATACAGGCACACAGGAGGAAGATGATGGAGATGATCTGTTGTTGAAATACGTTGATGAGTTCTGGTGGTTTCCTCATATGTGGAGTCATATGCAGCCTCATCTCTTCCATAATGAATCCTCTCTGATGGAACAAATGATCCTGAACAAAGACTTCGCTTTGGAACATGGTATTCCAGTAGATCTGGGATATGCCGTGGCCCCTCATCATTCTGGTGTATATCCAGTCCATATTCAGCTGTACGAGGCTTGGAAGAAAGCATGGGGGATACGAGTGACCAGTACTGAGGAATACCCACACCTCAAACCTGCACGCCACCGCAAGGGATTCATTCATAACGACATCATGGTGCTGCCCCGTCAGACATGCGGCTTATTCACTCACACCATCTTCTATAAAGAGTATCCGGGAGGCCCTAAAGAACTGGACAAAAGCATACGAGGAGGAGAACTGTTTCTCACCGTCCTTCTCAACCCTaTCAGTATATTTATGACTCATCTCTCCAACTATGGGAATGACCGCTTGGGCTTGTATACGTTCACTAATCTGGCTAACTTCCTGAAATGCTGGACCAACCTGAGGCTGCACACACTTCCTCCCGTGCAGCTCGCTCACAAGTACTTCACACTCTTCCCAGAACAGAGACACCCGCTCTGGCAGAACCCATGCGATGATAAACGGCATAAGGACATCTGGTCTAAAGAGAAGACCTGCGACAGGCTACCCAAGTTCATGGTGGTCGGGCCTCAGAAAACAGGCACGACAGCGCTCTACCTCTTCCTGATCATGCATCCCTTCATCTCCAGCAACTTTCCCAGTGTGAAAACATTTGAGGAAGTTCAGTTTTTCAACACCAACAACTACCACAAAGGCATCGACTGGTACATGGAGTTCTTTCCTGTACCCTCTAATGTCAGCACCGATTTCCTGTTTGAGAAGAGCGCAAATTACTTTCCTTCTGAGGATACGCCCAAACGAGCCGCCGCTCTCTTGCCTAAAGCCAAAATCCTTACTCTGCTGATCAACCCTTCAGACAGGGCATATAGCTGGTACCAGCACCAGAGGGCCCATGAAGACCCAGCAGCATTGCAGTTTAGTTTCTATGAGGTGATTTCAGCAGACCAGCTCGCTCCACCTGAGCTGCGCTCTCTCCAGAACCGCTGTCTCATACCTGGACTCTACGCCACACACCTGGAGAGATGGCTCACATACTACCCTCCAAACCAGCTGATGATTATTGATGGACAGCAGCTGAGGAATGACCCAGCTAAAGTGATGGACGAGCTTCAGAAATTTTTGGGTGTCACTCCTTATTACAACTACTCCCAGGCACTTACGTTTGATCCTCAGAAGGGCTTTTGGTGTCAGCTGTTGGAAGGGGGCAGAACTAAATGTTTGGGGAAGAGCAAGGGCCGCAAATACCCACCCATGGACTCTGAGTCACGAGCCTTTCTCTCCAGATTCTACAGGGATCAGAACATTGAATTATCTAAGCTGCTGCACAGACTGGGTCAGCCGCTGCCAGCCTGGCTCAGAGAGGAACTACAGAAGGTCAGGTAGCCCTAACCAAACCACCGCTCCTCTGGGTCAAAGATCCAGATTCACCCCTCAATGGAAACTAGACACTTGAATGGTACTCAATGCCACCTACCTGCAAGCTTGCAGAGCAAAGGTCAGAAATTCAGCTCACCAATCATTGGTGCCTCTGGAAATCCAAACAAAGCAGTATTGTGTGTCCATGGCAACATGACTTTTTTGTTGCAaaaggtcagtttttttttttcagtgaggTACGGTGATGTAACTGTGACCCTTGAACTTCAGATGCAGCTAAACAAAGACTGCATGAAGGCTGtaactgaaaaatgaaaaaacttcCTCCTATATATACTTTCCCCCATGAGACACTGGATATAGAGGTACGGCTTTAGATTTTATACGTCATCATTGAGAGAGATTTAGAACTGCACAACCACTGTTCATAACCTCACTCTTGCAAATATATCAGTCAATCAATCTATCAGCCAATCAAAGTCAAGATGCAAGATGTTAAGAATCGATATGGAGAAATAAAGAGCACAGTCAAGTTTTCTGAATCAGCTTTAAACCGGTTAATGGAGTGATGTCATTGTGATGTCAATGTCTCAGTCCACGTCCCAGTTACTGTTGTTCTAGACACaatggcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtgtgtgtgtctaggCATAAGTCTGTAGCCAGGTAGccttagccccgcccactggaCTGCAACTGGTTGGCTGATGAATTTGaaatgtgacttttatttttgaaaacaatttgCCTCAATAAGGTGAGAAAGTGCTTtgagaaatatgtaaataactatatatattcaataaacaCTGGAGAGAT

Function

GO: NA

KEGG:

id description
K02579 NDST4; heparan sulfate N-deacetylase/N-sulfotransferase NDST4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3979 lncRNA downstream 31374 11927551 ~ 11928996 (-) True G2742
TU3914 lncRNA downstream 50360 11849622 ~ 11910010 (-) False G2690
TU3915 lncRNA downstream 50360 11855220 ~ 11910010 (-) True G2690
TU3892 lncRNA downstream 164377 11793815 ~ 11795993 (-) True LOC122328967
TU3989 lncRNA upstream 3016 12097910 ~ 12098284 (-) False ugt8
TU3987 lncRNA upstream 48012 12142906 ~ 12150716 (-) True G2750
TU4090 lncRNA upstream 194935 12289829 ~ 12290106 (-) True G2826
TU4096 lncRNA upstream 240458 12335352 ~ 12336759 (-) True G2829
TU4112 lncRNA upstream 331319 12426213 ~ 12442443 (-) True G2837
XM_043236389.1 mRNA downstream 33548 11923120 ~ 11926822 (-) True mettl14
XM_043247864.1 mRNA downstream 42163 11910750 ~ 11918207 (-) True LOC122351032
XM_043249937.1 mRNA downstream 109715 11847007 ~ 11850655 (-) True grhprb
XM_043236331.1 mRNA downstream 141498 11816476 ~ 11818872 (-) True tma16
XM_043225008.1 mRNA downstream 171704 11783635 ~ 11788666 (-) True apela
XM_043240943.1 mRNA upstream 3035 12097929 ~ 12117383 (-) True ugt8
XM_043249903.1 mRNA upstream 66943 12161837 ~ 12195683 (-) True tll1
XM_043236922.1 mRNA upstream 116542 12211436 ~ 12225082 (-) True cpe
XM_043246632.1 mRNA upstream 141311 12236205 ~ 12246905 (-) True klhl2
XM_043236093.1 mRNA upstream 153601 12248495 ~ 12281828 (-) False rapgef2a
TU3761 other downstream 447537 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 462012 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 906429 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 979004 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 1146295 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 246841 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 248555 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 809305 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 809305 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 1059592 13154486 ~ 13159246 (-) False smim14

Expression Profile