RNA id: XM_043251231.1



Basic Information


Item Value
RNA id XM_043251231.1
length 2967
RNA type mRNA
GC content 0.46
exon number 15
gene id clgn
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19777091 ~ 19785647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTATCGCAGAGGGGCGGTTGTAAGTGGCATCCTGCGCTTCTGATAACACTGGCTATCGCTCTCATTCATAGCGGACTCTTCGCGCCGAAACACTGAATGACAAACCCATCCGCTTAAGCCACAGTTGACCGAAATATTGCCAATATTCATTGAGCTGGAGaTGAAGTTGTGGTGGGGCTGGACGTGTCTCTTGTTGCTCTCCATCTCCATGGTAACATGGGCCCAGAAAGAAGAGCtggatgatgaagaggaggcTCAAGTGGAAGATGGAGATGTGGACATGGAGACAGACAGCGGGGAAAGCACTGAAGCAGACGCCAATGTGTCTTTTGAGGTAACATACAAGACCCCAGTTCCAACAGGAGAAGTGTACTTCACTGCGACATTTGATGATGAGTCTTTGAGCAGctggcAGGTgtcaaaaacaatgaaagaGGATGCTGATGAAGATATTGCAAAATATGACGGTAAATGGGAGGTTGAGCCCCTGAAGGAAAACAAGGTGCCTGGTGATCTGGGGTTGGTCCTGAAATCTCGTGCTAAGCACCATGCCATCTCTGCTCTGCTTAACAGACCCTTTGTGTTTAAGGACAAACCCCTTATTGTCCAATATGAGGTCAACTTTCAAAACGGAATTGACTGCGGCGGTGCTTACATCAAGCTATTGTCAGACTCAGAAGATTTAGACCTGGAGCAGTTTCATGACCGGACACCATACAGCATTATGTTTGGGCCGGACAAATGCGGAGAGGACTACAAACTGCACTTCATCTTCAGACATAAAAACCCTCTTAATAAAGATGTGGAGGAAAAACATGCCAAACGACCAGACGTTGATCTAAAGAAGATCTACATCGATAAAAAGACTCACCTTTTTACTCTGGTTTTAAATCCGGACAATAGCTATGAGCTGTTTATAGACCAGTCCAGTGTTAGCAGAGGAAGTCTGTTGACAGATGTCGTCCCGCCTGTGAACCCTCCAAAAGAGATCGACGATCCCAAAGACTCCAAGCCAGAGGACTGGGATGAGAGAGCCAAAATCCCTGACCCGGAAGCAGTCAAACCTGAAGACTGGGACGAGGAGGCCCCAGCTAAGGTGCCTGATCCTGATGCAGTGAAGCCTGATGGCTGGTTGGATGATGAGCCAGAGTTTGTGCCTGACCCCACTGCAGAAAAGCCCGAGGACTGggatGAAGAAATGGATGGAGAATGGGAGGCTCCTCAGGTGCCAAATCCAGCATGTTCAGCTGCTCCTGGCTGTGGTGAATGGAAGCCGCCCATGATCAACAATCCTCAGTATAAGGGCAAATGGAAAGCTCCTCTCGTAGACAACCCCAACTACCAGGGTGTGTGGAGTCCACGGAAGGTCGCAAACCCTGACTACTTCGAGGATCTTCACCCATTTAGGATGGAGTCATTTAGTGCTGTAGGTTTGGAGCTGTGGTCTATGACCTCTGACATTTACTTCGACAATTTCATTATTACCTCGGAAAAGGAAGTGGCGGACCGCTGGGCTGCAGACAGCTGGGGACTCAAAAAACTGGTGGCTAGTGCCAATGAGCCTGGAGTGTTGAGTCAGCTGGCACTGGCTGCGGAAGAGAGGCCCTGGCTGTGGGTGGTTTACATCCTTACCGTTGGTTTGCCTGTTGGACTGGCTGTGCTCTTCTGCTGGCCAAAGAAGTCGGACGATGACTACGTATACAAGAAAATCGATCAGCCCAAAGCCGAAGCAGAGGAGGtagcagaagaagaagaggaggaggaagacgaggcagagaaaggaaaagatgaagatgaagcgAAAGAAGAGGAAGATACCGAAGCTACTGGTAATGAGAATGGCGAAGGGATGGACAACGACATTGGAAAAGATGGTGGAGAgtcagaggaggaggaagaggaggaggaggaggaggaggaggaagaagaggccAGTAAGCCAAATGACACGCCCTCAGAGGATGAAATGAAGGACGCCGATGAAGGAATTCAGAGCACAGGAGAAGAACCTAAAGCTGTGAGAAAGAGAAGAGTACGGAAGGACTGAAAATCCGCATTTTCCCCATGTTTCTTCCTCCCTTCTCTCGTTCCTTTGCCTCTTTTTGCTGCATGCTTTTGGCAATATGCCCTTCAGCATGCAAAAAAACGGCAAACCTAGCCGCTCTCCTGAAGAGGTCATTCTTCATCCAACTGAACCTCGCCTCCCCTCTTTCAGTCTTCCGCTTAGTTCTTATCGGTTACAGTTGGGATTTAGATACAAGAGTCAGACCTGCTGAGTTTTAGCTCTacgttttttccttttttcgaTTACGATTCAAGTAGTACTGGGCCAGTGTTTCCCTACTAGTAAGTCTGAATACTGTGAAGGGAAATGGATATTTTAGAAAGACGAGCTAGTTTATGATCACCTCAACgtttttaagttattaaaaaagGGTTCAGTTCTTTTGTGAGTTTTTAAGTTATGAGCTTTTTAACATGATCAAATCACTCTGATcgtatttattgtttgtatctTGTTTGAAAAATGATGCAATTGAGTTTAGATATAGGACCTTTTAATCTTGCATTCTACTGTCATTACCAATGTTAGCAGGCTCTGGAGGAGAGCTCCGTCAAACCAGGAGCCGTCTTCACCAAACATCTAGGTCAGTGAAGTGCTAGGAATGCAAATCAGTATTGCTTTTTTGGCATCGAAGAAAGTCGTTACGCACAAGTCAGAGCTGATCTCAGCTCCGCGTCATCACTGACACTCTAACAGCAGACCCAGACACAAGCACACTGAAAACAGACTGACCACCATGTATGAAACCATTCAGCTTCGGAAGGTTGTTTTTCAAGTGatgaacagttttatttttctgctttttttttttttggttgtgtgTTCAGCCTTACAAGGACAGccttttgtttacatgtttgcaAACTGTTCATTGCTCttggaaataaatatttactataaa

Function


GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09551 CLGN; calmegin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6573 lncRNA downstream 144838 19631098 ~ 19632253 (-) True G4615
TU6568 lncRNA downstream 165576 19608383 ~ 19611515 (-) True G4611
TU6569 lncRNA downstream 165576 19608383 ~ 19611515 (-) False G4611
TU6564 lncRNA downstream 173890 19598210 ~ 19603201 (-) False G4609
TU6555 lncRNA downstream 173890 19599556 ~ 19603201 (-) False G4609
TU6634 lncRNA upstream 150743 19936390 ~ 19936759 (-) True G4671
TU6683 lncRNA upstream 152372 19938019 ~ 19938401 (-) True G4713
TU6780 lncRNA upstream 351425 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 370017 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 414348 20199995 ~ 20265069 (-) True G4870
XM_043251226.1 mRNA downstream 19735 19665097 ~ 19757356 (-) True maml3
XM_043251230.1 mRNA downstream 152850 19611829 ~ 19624241 (-) True tesk1a
XM_043244165.1 mRNA downstream 180089 19589806 ~ 19597002 (-) False zfp91
XM_043248486.1 mRNA upstream 92544 19878191 ~ 19879651 (-) True hmx4
XM_043249777.1 mRNA upstream 95478 19881125 ~ 19882724 (-) True hmx1
XM_043245252.1 mRNA upstream 126033 19911680 ~ 19916332 (-) True adra2c
XM_043246091.1 mRNA upstream 181220 19966867 ~ 19984961 (-) True dok7b
XM_043246100.1 mRNA upstream 183212 19968859 ~ 19984964 (-) False dok7b
TU6528 other downstream 237945 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 1896674 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3703171 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4546205 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4747471 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 311308 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 327103 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 327495 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 351425 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 351425 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile