RNA id: XM_043251516.1


Basic Information

Item Value
RNA id XM_043251516.1
length 2220
RNA type mRNA
GC content 0.47
exon number 13
gene id arhgef38
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14966434 ~ 14976255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATGGAGTTAGTGTACACTGCAAGAGCAGCAACACTGCACCTGTTCCTCTTCCCAGACTCTCcccttctctgtctctctctttcacctTTACACCAGACAGCCAAACAAGAGGGAGCAGAAAGGGGTCAACATGGATCCCAACCAGGCCAGTGGGAATGACAGAGAAAGTGAAAAGggggagaagaaagagaaggatAAAGGCATTAAAAGGAGAAACAGACTTTTTATAAGATACCTGGAAAGGAGGAAGACAGATACTATTGTGGATGAGGACGCTTCCAAAGGTGACATCAGCATCTCAACCTTGGTGAGAAGGAGCCATTCTGACAAGACTGAGTATAGCGCTAAACTTAAAGAGAAAATGTCCCCGCATGATCTCTCCTCACCCACATCCCCAGCCATGGATCCAGAAGAGATCCGCCATAGAAGGATGGtaaaaaggtcaaaggtcatcgAGGAGCTGGTTAGGACAGAGGGAGACTATCAAAAGGACTTGGAGCTCTGCATAAGCGAGGTTTTGCTTCCTTTAAGAGCAGCCCAGgtGGTGGATATAGATCGACTGTTCACCAACattgagtctgtgtgtgttgtctcTGCTGAACTGCTCCAAAGACTGAGAGATGCCATAGCTGACCCTGACCCCGAAACTCAACTCATAgGAGAAGTGTTTATCCAAGCCAAAGCTGTCATGGAGGATGTATACAAAATTTACTGCTATCATCACGACGAGGCGAATGCTTTGCTCAAGTCTTATGAAGCACAGGATGACATCCAGCAGCATTTTAGAAGATGCATATCCACACTCAAGAAAATATACGACCAAGAagGGAAGCCCAATTTGCTTGATATGGGCTCTCTGCTTATTAAACCGGTGCAGCGTATTATGAAATACCCGCTGCTATTGGCTGAGCTGTGGAATGCCACACCCACAGACCACCCTGACAACAGGCCCCTACAGGAAGCTCTGACCACTGTAAAGATTATTAACATCAACATTAACGAGTTCAAGAGGAGAAAAGACATAGTGCTGAAGTATAAGAGGAGTGATGATGAAACCTCACTGATCGGTAAACTCAACAAGTTCAACATTCATTCAATCAGAAAGAAATCCGACCGACTGACAAGCTATTTCAAGATTCTCACTGGTGTCGAGCCACAGGTGAGAGATGAGGCGTTTGACAAAGAGGAAAAGCTTTTCCGTAGCCTGGAGAAAGCTGTGAGACAGCTGGTGAAAAACATCACCTGCTACTTGCTCTATACTCAGGAGATGATATCTATTGCTGTTCAAAATGCACAGGACCTAGAAGCTATAATGAAGGATCCAGACAAAATAGACACAAATGGCTTTCAGCAAAAGAAGAACGGCAATGATCCATACAAACAGTTTAAAGATCATATGGAGCGTCTTGTTCTTGCTCCACTCTCAAGCCTGCTGGGAATGTTTGCATCGCCCCAGAAGCTGATACAGAAGCGCTACGACAAACTGTTGGACTACTGCAGCCAGCTGGATTCCCGATCCTCCAAAGAGGAGCAGGGCCAGGCCAAAAAAGATTACCTGGCCCTCAATGCACAGCTGCTTGAGGAGCTGCAGTGCTTCAACCGAGCTGTCAGGACGATCCTCACCAACTGCTTGATTTGTGTAGTAAAATTAATTAGAAAGCTGATGGAAGACGCTCAGCCGCCTGTTCATCAGATACCGGTTCCCTTGTCGAACTTTAGTGAAGTCCAAAACTCAATCATGGAGGAGCTGAGCAACCTTGGATTCTTCAAAGATAATTCCCAAAAGCTGATGGAGCGCAAAGTGAGCTTTGAAAAACGGGACAAGAAAACGGTCCCAGAGATCCCCAGACAGACAGAGGAGCACAGAGCCTGGCTCCTGGAAGAGTTTGCAGTGGATCGTCTCTATCAGCTCAAGCGTAACTGCAACGCCTGTCAGGAAAATGACGTGAGTCTGCTGGAGGGGGAGCTGGTGGCTCTGCTGGAAGACAAAGACCCTATGGGAAGCAGCAGCCGCTGGCTAGTGCATACTGGGATTCTACGCGGTTTATGCATTCCAGGCCCGCTGTGAACAAGAGCTCACGCTTCAGGAGTACCAGCATGTTCGTATCCTTCAGTTCTCAGACCTCGTTGGCAACAAAGACTGGTGGCTGGCCGAATCCAACGGACAAAAAGGCTACGTCCCGGCAAATTACCTTGGAAAGATGTCGTATGcttaaa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4862 lncRNA upstream 96542 14862612 ~ 14869892 (+) True G3381
TU4881 lncRNA upstream 154291 14749316 ~ 14812143 (+) True G3394
TU4877 lncRNA upstream 156713 14745709 ~ 14809721 (+) True G3391
TU4867 lncRNA upstream 183595 14716000 ~ 14782839 (+) True G3384
TU4832 lncRNA upstream 191757 14681459 ~ 14774677 (+) True G3374
TU4923 lncRNA downstream 49718 15025710 ~ 15029067 (+) True G3432
TU4956 lncRNA downstream 55053 15031045 ~ 15034800 (+) True hemgn
TU4958 lncRNA downstream 55053 15031045 ~ 15032957 (+) False hemgn
TU4966 lncRNA downstream 61287 15037279 ~ 15037670 (+) True G3443
TU4920 lncRNA downstream 87259 15063251 ~ 15114948 (+) True G3431
XM_043234871.1 mRNA upstream 7326 14938737 ~ 14959108 (+) True tet2
XM_043243393.1 mRNA upstream 104518 14854210 ~ 14861916 (+) True LOC122348129
XM_043243382.1 mRNA upstream 112524 14850160 ~ 14853910 (+) True toporsa
XM_043248441.1 mRNA upstream 116763 14848013 ~ 14849671 (+) True ndufb6
XM_043240244.1 mRNA upstream 123025 14832703 ~ 14843409 (+) True mxd4
XM_043248942.1 mRNA downstream 4380 14980372 ~ 14988078 (+) True g3bp2a
XM_043239520.1 mRNA downstream 12405 14988397 ~ 15004240 (+) True uso1
XM_043239535.1 mRNA downstream 12405 14988397 ~ 15004240 (+) False uso1
XM_043239526.1 mRNA downstream 12405 14988397 ~ 15004240 (+) False uso1
XM_043239541.1 mRNA downstream 12405 14988397 ~ 15004240 (+) False uso1
TU4844 other upstream 174646 14723545 ~ 14791788 (+) False G3380
TU5171 other downstream 502106 15478098 ~ 15498680 (+) True G3599
TU5228 other downstream 677101 15653093 ~ 15653381 (+) True G3647
XR_006251846.1 other downstream 2597129 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 3271258 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 3271260 18247252 ~ 18282761 (+) False dclk2a

Expression Profile