RNA id: XM_043254526.1


Basic Information

Item Value
RNA id XM_043254526.1
length 4162
RNA type mRNA
GC content 0.41
exon number 32
gene id LOC122355940
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28809212 ~ 28841535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgataaataaaaataaaatggcaagtAAAAGACAAATGGAAGAATCAGACACTTGTCCTGTCATCCCAAAGAAGAGAGAGCCTGGCAGAGACATACAAATGAAGTTCAATGACCCCATTCATGGACACATGGAGCTGCACCCCCTGCTGGTGAAGATCATCGATACTCCTCAGTTTCAGAGACTCAGACACATCAAACAGCTGGGAACAAAGTATCTGGTGTATCCAGGAGCCACTCACACCCGCTTTGAACACTCTCTTGGcGTGGCATATTTAGCAGGATGCCTTCTCAAGAGTCTAAGAGATAAACAGCCGGAACTGATGAAACAGCTGAACATTACAGATCGAGATGTGTTGTGTGTTCAGATTGCTGCTCTGTGTCATGACATGGGTCATGGTCCATTGTCTCATTTGTTTGATGGCATGTTTATCCCTCAAGTCCTGCCTGaTAAGAACTGGGAGCATGAGAATGCATCAGTTGATATGTTTAAACACATGGTAGAGAAGAATGGACTGAAAAAGGTGATGGAACAGTATGGATTGGATCCTGATGAAGACATCGTATTTATTGGGCAATTAATTAAGAAAGAACGTGAAGTTAGTCAGCGGTCAGCAGAAAAGGCTTTCCTGTATGAGATTGTGGCAAACAAAGTAAACGGCATTGATGTGGACAAATGGGACTATTTGGCTCGAGATTGTCATTACCTCGGCATTCCTAACGGCTTTGACTGTGAACGGCTGCTGAAGTCTGCTCGAGTGTGTGTGGTGGACGGGACAAAGCAGATCTGCTTCAGAGACAAGGTGGCTGATAATGTTTATAACATGTTTTACACCCGATACACTCTTCATCGCCAGGCTCTACAGCACAACACCGGCTACATCATTGACATCAAGATGACAGAAGCCCTTATAAAAGCTAATGAAATGCTGAAGATCTCTGATGCCATATTTGACATGGAAAAGTTCACCAACCTCACAGATCACATCTGTGATCAGATCAGCCAGTCAACTGTCCCTGAGTTGAAGGACGCCAGAGACATTTTAGATGACATTACCCAAAGACGTCTGCCAAAGTTTGTTGGAGAGGCCAGACTAAGTGAAGAAAACTTTAAGACTGAACTGAAGAAGAAATGGACGTTTTCTAATGTGGACCCTCaaatttatGTGGCCAGTTACAAGCCAAATATTCATCATGAATGGCTTGTTAGAGTGTACCACGAACAACCAAATGTGAACATCCAGAGGCCTACACAAGAGGAACTTAAGAAGTACTTTGCAAAGTGGTGCGAGGAATCCCACTTAATTCCTTCAGAACCTGACATTAATTCCAatcgCCGCTTTGATCATGTCCCGCATAAGGTAAAGTTTATTGGAGAAGCCAGAATGGAGATAGCTGCATTAAAGACTAGACTGCAGGAAGAGATAGTCGAGATGTACAACCAGAAGAAGAACACCAGCCCAGAACTGGAAGCTAATCACTTCGAAACTTATGTTCTTGACATGGGTTTTGGTGAAGTAGGAAAAGAGCCCATtgataatgttcatttttacagCAAGGAAAACCCAGACATAGCCTTCAAGATGAAGAAGGAAAAGGTGTCCACTCTCAAGCCGAAGAAGTTTCATGAATGGCTCATTAGATTGTACTACAATAACACTGAAGATAAGGAGCACCAGGCAGAGGTCCAGCAAATAGCTGAAAAGTGCTTTCATGATTGGTGTAGAAAATCCGATCTCATTGATTCCAGAGATGAGTCAGaagcAGATGTTTCAGTTCATGTCTTCCAGACTTCCTCAGGCAAGATCTTCAATGACCCCATTCATGGTCAAATCGAGCTGCCTCATCTGCTGGTGAAGATCATCGATACTCCTCAGTTTCAGAGGCTCAGACACATCAAACAGCTGGGAGGAACATACCTGGTGTATCCAGGAGCCACTCACACCCGCTTTGAGCACTCTCTGGGTTCTGCATATTTAGCAGGACAGCTAGCCAAGGTACTGCAAGAAAAACAGAAGGATCTAAAGATTACTAAAGAAGATATCCTATGTGTCCAAATTGCTGCTTTGTGCTACAATTTAGgTCACGGTCCTTTCTCGTATGTGTTTAAGGACATGGTCTTCCCTAAATTGTGTGCTAACCAATGGAAGCCCGAGGTGGCCTCTGCTTGGATATTTCTGGACATAGTAGAAAGCAATGAGGCagtgaaaaaagcatttaagGATGAGAAAATTCTCGATAGTCTGGACTTTATTAAGGATTTAATTTGTTCTCCAAAGGACGAGCGTGAAAATCATGACAAATCCTTCCTGTTTGAGATTGTGGCAAATAAACAGAACTACATTGATGTCCGTAAATGGGATTATCTTGCAAGAGACTGTCATTATCTTGGGATCCCAAACAGCTTTGATCATCAGCGGCTGCTGAAATCTGCGCTAGTCTGTAAAGTCCCGAGTCTGGAGAGAAATCGCATCTGCTTCAGAGATAAGGTGGCAGATGATATTTACGTCATGTTTAACACCCAATACTCTCTGTATCGCCAGGCCTACATGCACAAGACCGTTAAAATCATCGAAGAAGAAATTAGTGGTGCTCTTGTAGATATGGTCAAACGGGACATCTCTGAAATCACAGAACTCATTTCACGAAAGGATTCCATGAAAACTGAAACCTCAGCGGTcacaaaagagaaaatggaaaagTTCCTCAAATTGACAGATCACATCTTTGAGGACATCTTGTACTCCACTGATGACGAGCTGAAAAATGCCCAGATGACACTTAAGAAAGTTGTCAAGAGATGCGTTCCAAAGTGTATAGAAGAGACTCGAATtacaaacactgaaaataaagatcTAAAAGAGTTAAAGGCAATGCAGGAGAAACGCTGGAAAGAACCAGTGGGCACATGGAACACAGATCCCTTCAATGTCAACTTGAGAGAGGACATTTTCAAATTTCGTGTGAATCGACTGAATTATAACCAGAAAGACACAGACCCAGAAAAAGACCCCATCAAAGTTGTCTATTTCTACAGGAAGAGGAACCCCACTGAAGTCTTCAAGATTAAGAAATATGAGGTATCCAGTCTACTGCCAGAGGAGTTTACAGAATATATTTGTAGGGTTTACTACGAAAAGAAAAGTGAtaaggaggaggaagaagttAAGAAGTTCATGAATTGGAGGCGCCGTGACATGGTAGGTGTTTATGGTACACAGCAAAAAGCCCAGAGTTAAATTAACTCTCCAGGTAGTTTATTTGGCTTCATCCTGAAGAGTGTTAAAGTTAATGAGGTGATTAAGTAATGACTGACCATTATCGAAGGCACCtgatgttaaaatgtttgtcaCCATCATGGTGGCCAGTGATTACTTTAATTGGGCTTTTGAACATTGAATTTTGTTTGGCTCAAGCAaacacaatcaaataaaaaatcagaatgaattagtttaaaattttataaaaattttgttCAGATTGTGAAATGGAGTTTAAACCTATTCTAATCCGACCGAGAGGACGTATAAACACCTCATTGgattgaaaataaaagctacaAATTTCTGCGCGTGTGCAATAACGTAAAAACGCATGGATGTTGTCATAAGCTAGATGCTGAGTGCTAAGCACCAGTCCTTGCTTTTGACTTTCATCACAGATGTCTTGCTCTGAGCTCTGAAAGGGACATTGCAATGCCTTGATAAATACATGCAGCACAGCACAACACATTACACGTTTGGTGTCTCCTAATAAGCAGCAGAAAGAGGTTAATATAAGTctgttttaaaaccaaaaaagcagCAATGGTAAAGTGGCTGTTAGAATGCACATCTTGAAATGGTTTAAATCGTGTGTTCATGCACTGTGCGAATATCAAAAGATCAAATTCAATTGTGTCATTTAAATGCGTATATCAATCTGATTACTTAATTCAGTGTTCATGTAAACACTGCAATCAGATTCATAAGTCTTATTGATTTCATTCCCatcaaaaagtgtaaaatataccTACTGATCACTAAGATTGTGACAAagattgtgatttttctttgGTGATTCCGCTCACTAACATGAGGTGTCTTCAATAACGGACAATCATCACCTAATCACCTTATTATCTCATTAACTCTGCTTAAGTGTTAATTTGACACTCTTCAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11133 lncRNA downstream 1506 28743444 ~ 28807706 (-) True G7541
TU11146 lncRNA downstream 7547 28792644 ~ 28801665 (-) True G7551
TU11145 lncRNA downstream 8356 28790466 ~ 28800856 (-) True G7550
TU11130 lncRNA downstream 15621 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA downstream 25113 28743444 ~ 28784099 (-) False G7541
TU11154 lncRNA upstream 102480 28943997 ~ 28944618 (-) False LOC122324333
TU11205 lncRNA upstream 130377 28971894 ~ 28981118 (-) True G7579
TU11218 lncRNA upstream 174148 29015665 ~ 29017156 (-) True G7591
TU11223 lncRNA upstream 226465 29067982 ~ 29134568 (-) False LOC122362981
TU11231 lncRNA upstream 226465 29067982 ~ 29152545 (-) False LOC122362981
XM_043264597.1 mRNA downstream 132387 28674433 ~ 28676825 (-) True LOC122362864
XM_043255379.1 mRNA downstream 145966 28654009 ~ 28663246 (-) True LOC122356533
XM_043255722.1 mRNA downstream 157029 28645661 ~ 28652183 (-) True LOC122356692
XM_043256174.1 mRNA downstream 165715 28634924 ~ 28643497 (-) True LOC122356986
XM_043262968.1 mRNA downstream 182420 28615819 ~ 28626792 (-) True LOC122361856
XM_043245603.1 mRNA upstream 51624 28893141 ~ 28898735 (-) True LOC122349524
XM_043220034.1 mRNA upstream 58196 28899713 ~ 28913858 (-) True LOC122325105
XM_043257929.1 mRNA upstream 73481 28914998 ~ 28924504 (-) True LOC122358117
XM_043260208.1 mRNA upstream 83099 28924616 ~ 28928580 (-) True LOC122359935
XM_043257816.1 mRNA upstream 88186 28929703 ~ 28941914 (-) False LOC122357989
TU11106 other downstream 283661 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 362621 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 417159 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 560689 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 732768 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 208226 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 208226 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 264797 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 285254 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 285254 29126771 ~ 29128775 (-) False G7563

Expression Profile