RNA id: XM_043255379.1


Basic Information

Item Value
RNA id XM_043255379.1
length 4335
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC122356533
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28654009 ~ 28663246 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCAGCCTATAAGGGTGGGTTGATAGCGACAGTGACCACCTTCTGCCCACATCGAAGATCTCCAGAGTGGGACACAATAAGGCCAGAGAGATAATAAGGCGAAGAGAGAGATGCAAAACATCCGGGCCTATGTGTGACATCACCCTCTCCTCGCAGCGTCCTTCAAGGCTTCCAATCAAAAGTGAAAGCAAGAACGCTACTTTTCTGCGCATCTAAACCCTAAACCTGTGTATTTAAACGGCCTCGTATTTTGAGGGGCACCGGGCCTCCAGGATGAGTTTCCATGAAGACAGAGAAGAGGAGGACACTGCCTCGAAATGGTGTTCATCGTCTCCTGCCTTCAATAATACAACAGTGGACTCTGATGATTACCAAAGtgtcaACAAAAGGAATAGACAGAACTCTCCTGAACCAAGTGGTGTGTCTGTGAAGAGTAACAACTCCATGGATTTTAACCCGCCAAAATTCAGCATGGAACCAGTGCCCTCTAATCATTCGGGCCAAATGGATGGCACAGATACAATCAGCTCTTCTTCTAGATCCCATTATCAGACCCACGTTGGGCAGGAGAACAAAAAATCAGTCCTACAGACACACGCACTGGAGACTACAGACCTGCAGACATGCAAAGACCAGAACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTTGAGGGAATCAAAATTCAAGAGAATCAAACCCTCCTGAACAGGATCTATACACAGCTCTACATCATAGAGGGGGAGAGTGAAGGAGTGAATAAAGAACATGAGGttttacagatggagaaaacaTCCAGAACATATGACTCACAAGACATTTCAATCTACTGCAATGACATCTTTAAAGCCTCACCTAAACCAGGATCTGAGGAGAAAGACCAGATCaagactgttcttactaaaggcatCGCTGGAATCGGAAAAACCGtttctgtgcagaagttcattctggactgggccgagggaaaagccaatcaagatgtagatttcatttttgttcttccatttcgagagctgaacttgatcCGACATCATCAGTATagtcttcacagacttctgctggactttcatcctgaacttcaagatctggactcaaagatttatgaggagtgtaaagttgtgttcatctttgatggtctagatgaaagcagaatcacactgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGACAAACCTCATGAAAGGAGAgctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctCCAAATACATCAACCGTCTGACAGAAATTCAGGGATTCACTGAGCttcagaaggaggaatatttcaggaagagAATCAGTGACCAGCATCAAGCAAGCAGAATCATCTCACTTATTAGAAGAGCAAGAAGCATCCACATTATGTGTCACATCcctgtcttctgctggatctcatccaCTGTGCTTCAGAAGCTCCTGGAAGAAGATCTGAATGCAGAAATGcctcaaactctgactgaaatgtacatccacTTCCTGCTGATTCAGATTAACATGAGGAACCAGAAGTATGAAGAGAGAGATCCAGAGAAACTCCTGCAGTCTAACAGAGAAGtaattgtgaaacttgctgaAGTAGCTTTCAAACAACTGATGAAGGGTAATGTGATGTTCTATGAGGAGGACCTGATTGAGAGCGGCATTGACATCACTGATGCCtcagtgtattctgggatttgTACTGAGATCTTTAAGGAGGAGTCTGTGATTCATCAGAGAAAAGTCTACAACTTCATTCATTTGAGTGTTCAGGAGTTTCTTGcagctttttatgtttttcactACAATTTATGCACAGTCATGAAGACACTAACCTTTTTTGCGCTCCATAATTTGCTTAAAGGAGCAGTAGATGCATCCATAAAAAGTGAGAATGGACACCTGGATCTGTTCCTGCGGTTCCTGCTGGGCATCTCACTGGAAtccaatcagagactcttacagGATCTACTGACACATACAGAGAACAGCTCAGAGAGCATCACAGAAGCCACACAGTACATTAAAGAAAAGATCAGAGATGGACATGGACTCTCCACTGAAAGATCCATCAATCTGTTCCTCTGTCTGCTGGAAGTGAAAGATCAGACTCTGTCCAGAGAGATTCAAGATTTTGTGAAATCAGACAAACACTCAGAGAAGAAACTCTCTCCTGCTCACTGCTCAACCATTGCCTACATGCTTCAGATGTCAGAGGAAGTGTTGGATGAGCTGGATGCTCAGACATACAACACTTCAGATGAGGGCAGAAGAAGACTGTTACCAGCTGTGATCAACTGCAGAAAAGCTCTTTTTCCTGGCTGTAATCTCACTGCTCAGCATTGTGAAATTGTGTCATCAGCTCTCAAATGCTCAGACTctgtcctgagagagctggatctgactAACAATGActtgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactctcAGCTGGAGATACTGAGGTTGTCAGGCTGTATGGTGACGgaggaaggctgtggttatttgtcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgcaGCTGCTCAAACACAAACTGGAGGATCCCAACTATGAACTGAAGATACTCAACGTGGACCATGGAGGAGAGCTGATGAAGACAGCAGGACTAAAAAAGTATGCCTGTACTCTCACACTGGATCTAAACACCATAAACTCGTATCTAATGCTGTCTGAAGAGAACAGGAAGATCACACATGTGACAGAGAAACAgccgtatcctgatcatccagagcGATTTGATGCTTGGTATCAAGTTCTGTGTGAAGAGAGTTTGTCCcaacgctgttactgggaggttGAATGGAATGGATGGGCTTATATAGCAGTGTCATACAAAGAAATCTGCAGGAAAGGAGGGAGGGACTGTAGGTTTGGACGCAATGAAAAGTCATGGATTCTGTTCTGCTCTAATAACAGATTTACTGTCTGTCATGATAATAAGTTCATAGACATCGGTGTCCCTTCACCTTTGTTTAACAGAGTAGGGGTGTATCTGGACTGGTCAGCTGGTACTCTGTCGTActtcagcgtctctgacacacacacactcacacacttacacacattcaaCACCACATTCACTCACCTCTACGCTGGATTCAGGGTTTATGAATCCTCATTGTCTTTGTGTCAGATTTGaaagcacagacacacaaatagCTTCTTGTATCCTTGTCTCTTCTCACGTTTGTTTGGTTGTGGTGACATTGTTTGTGGACCAGGACAAAGTTGTCGGCGATTCTTCCTGTTTTAAAGTCCTGCAGAGACTTACAGTGAAAAGATCTGTGACCCtactactttttaaattgtgcatTCTGAATTCGGcattaaactacttcagtctgtgtgcattgagTTCATTTAATACAagagtttcacaatttgagtggaattactaaaataaattaacttttccacaacatttattgagatgcacctgcaTTTTTTGTAACAGTAGTTCATTCATAATTAACTTGTAACAgtgaatgtattttatgttttaaataattttgtaataattgcCAATGAGTTGTTTACGCTGCTACACACGGAATGTAAAAATTAAGACACTTTTCCGTAAAATCTGAAAGTGAGTTGCACTTAAAGAacagtattttataattttatagttatatataattgatGTAAGACATTGTCACTTATCACTTATCCAGACCTCTTCCAGAGACCTTGGCATTgtttcatattataaatatattattttctagGAGCTAAGGCTGATATAGCAGTGACCTATAAAGCACTCAGCAGGAAAGGAGGGAACAATTGTTGGTTTGGATGCAGTTATAAATCCTGGAGTCTGTACTGTGAAAACAGACTTCTAAAACTACAATTATAAGTAGTTTGCATGTTGTTTTGTTGCTTCCTTGACACGTAATGTTGCGATTTTAcagttttctgtttatattgttttatatttcttttggaTTTGTCAAAAAGTTTGGTCAAGTAAGCTAACTGTGTGTTGTTTtcatattgcaaaatataaagtaattgGACTGAATCAAGCTGATTTTAATTGgctgaaagtgaaagtgaaaattATTGATTTCATGGTCGAATCaggtgaaaatattttcaatgtaaCAGCTGCATGGTTTAATACAGATATATTggttttattcaataaatcttTGCACATGGTGAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247505.1 lncRNA downstream 164500 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 222381 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 236438 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 236473 28415443 ~ 28417536 (-) False LOC122326209
TU11095 lncRNA downstream 243701 28408242 ~ 28410308 (-) True G7516
TU11120 lncRNA upstream 7675 28670921 ~ 28672634 (-) True G7535
TU11130 lncRNA upstream 80198 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA upstream 80198 28743444 ~ 28784099 (-) False G7541
TU11133 lncRNA upstream 80198 28743444 ~ 28807706 (-) True G7541
TU11142 lncRNA upstream 110108 28773354 ~ 28774166 (-) True G7547
XM_043255722.1 mRNA downstream 1826 28645661 ~ 28652183 (-) True LOC122356692
XM_043256174.1 mRNA downstream 10512 28634924 ~ 28643497 (-) True LOC122356986
XM_043263065.1 mRNA downstream 27217 28614050 ~ 28626792 (-) False LOC122361856
XM_043263154.1 mRNA downstream 27217 28615819 ~ 28626792 (-) False LOC122361856
XM_043262968.1 mRNA downstream 27217 28615819 ~ 28626792 (-) True LOC122361856
XM_043264597.1 mRNA upstream 11187 28674433 ~ 28676825 (-) True LOC122362864
XM_043254680.1 mRNA upstream 145966 28809212 ~ 28841535 (-) False LOC122355940
XM_043254526.1 mRNA upstream 145966 28809212 ~ 28841517 (-) False LOC122355940
XM_043254605.1 mRNA upstream 145967 28809213 ~ 28841535 (-) False LOC122355940
XM_043254759.1 mRNA upstream 145967 28809213 ~ 28840716 (-) True LOC122355940
TU11106 other downstream 128458 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 207418 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 261956 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 405486 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 577565 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 386497 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 386497 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 443068 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 463525 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 463525 29126771 ~ 29128775 (-) False G7563

Expression Profile