RNA id: XM_043255514.1


Basic Information

Item Value
RNA id XM_043255514.1
length 3764
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122356586
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29076419 ~ 29085458 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACACTGAAAGATGTTTGAACAGGAAAAGGAAAGGACTTTGGACAGTTTTCCCAAGTTAATGAGAGAACCTCATATCCTTCTTATAAAACACTGTTAGCTGACTCAAGTTCTGCTCTCACCGAGCTCTAGAAGCCCGAAGCTCATTATACCATGTCTTATTCTTCAGTGTAACTTATAGTTACTTACTTTTTTCATCTCATACTTCATGAAGTTTCTCCTTTTACATTTTGGTTAAATTAAAAGGATTTGCAAAATTTGGACTTTTTGGACCGAAGGTTCCTCTgtgAAGTGAATCGTTGAAGGACGATGGCATGTGTTAAAGAGCTGCTCGTAAACCCACTGAAGGATCTGGTTAAGGATGATCTAAAAGAGTTTCGGTGGCACTTGAAGAATTATGAGGGTGTTTCAGCTTCTGAGATGGAGAATGCAGATGTCTTAGACACAGTAGATAAAATGATGGCACTTTTTGGAGAAAAAGAAGCTGTTGAGATCACAATTAACATCCTGAAGAAGATGAACCAGAATCTTCTGGTTGAAGAGATAGAGAACCAATACATCAGAGTCTCAACTCCTAAAGTTGCTGATACAGCTGATTACAGAGAGATCAGTCTCAGGCTGAAGAACAGATTACAAGAAGACTATAATCGGATATTGATTGGTAATTCACAAACGGGTCATCAGAAATATCTGAACGATATTTACACTGATCTATACGTGGTGGAGAACGAGACTGGAGGAATAGTGAATGACCACGAGGTGAGACGCATTCAACTGAACATCCACCACGTTACTGTGAAGAACACCACAATCTTGTGCAATGATCTGTTCAAAGTTCAGCATGATGATGGtcgacaaaacaaaaaagtgttaACAATGGGGATTGCTGGGGTGGGAAAAACTGTCTCTGTCAATAAGTTCATTCTTGACTGGGCTGAAGAAAAGGAAAATCAGGACATTCTCTTCATATTTCCACTCCCATTCCGTAGACTGAATATGATTACAAAGGACTGCAGTCTCATGGAACTGCTTCACGAATGCTTCTTTAGTGATCCTCAAGAGCTACCCTTACTTCCTAAGGATGACTGTAAGGTCATGTTCATTTTCGATGGGCTGGATGAATGTCGCTTCCCTTTGAGATTTCATGATTGTGATAGATTAATGGATGTGCATGAAAAAACAACTGTGAGTCAGATAGTAACAAACCTGATCAAAAGGAATCTGGTTTcgtctgctctcatctggatcacatccagaccagcagcagccggTCTGATACCCAGAGACCACATTGATCAGGTGACAGAAGTGCGAGGATTCAACGATGAGCAAAAAGAGcaatatttcatcaaaaacagcaGTCTTGAGCTTGCCGGAAACATCATGCGTCACATCAGAAAATCAAGGAGTCTgtacatcatgtgccacatccctCTTTTCTGCTGGATCTCTCTCACTGTTCTTCAGCCTCTGCTGGCTCGAGAGAGCAATGACAAAACTCCTACAACTCTCACAGAGATGTACACAGCCTTCTTGCTTTCTCAGAAGcaacagatggaaaaaaaatacagtgataaTCCTGAACTTAGGTTAGAAGCCAGATGCTTTGATAAGATTGTCCTGAAGCTTGGGAAACTGGCCTTTAAACAGCTGGAGAAAGGAAATCTGATTTTCTACAAAGAAGATCTTGAGGAGTGTGGACTAGATGTCAGTGAAGGGTCGGTGTACTCTGGATTATGCACTCAGATCTTTCAGGAGGAAAAGGCTGTTTCagccaaaaacatttacagcttTGTACATCTCAGTGTCCAGGAGTTCCTTGCTGCTCTCTATGTGTTTTTGATTTACAAAgatgagaaatcaaacctattttTTCACACATGGAAAAAGACAATATCATGGAAACTTTCTAACAGGCCACTGTTTCATCTTCTGAAGTCTGCAGTCAACAAGGCATTACAAAGTGAGAATGGACACCTGGACCTTTTCCTCCGGTTTCTCTTGGGTCTCTCATTGGAGTCCAATCAGAATGACTTGAAGGAACTGCTGCCAGAAGTGGAACTGAAaactatgaatattaaaaacaccGTTGACTATATAAAACAGACAATAGAGAAGGAGAAATCAGCGGAGAGGACAATCAATCTGTTCTTCTGCCTAAGTGAACTGAAATATGACTTTGTAAGTGATATCCAGAAGAACCTGAGCTCTGGAAATCTTTCAGCACAGAATCTGTCCTCTGCTCAGTGGTCAGCTCTGGTGTATGTGCTGCTGATGTCAGAAAGCACTCAAGATAAGTTGGAACTGCAAAAATACAGAAGATCTGAAGAAGCACTGATGAGAATGTTGCCAGTGATCAAAAACACAAGAAGGGCACtGCTACAGTCCTGTAATCTCACTGTTGAGTGTTGTGGGAGTTTGTCGTTGGTGTTACAGTCCTCTATCCTGAGGGAGCTGgatctgagtaacaatgacctgcaggattcaggagtgaagctgctctccgatggactgaagagtccaaactgtcagcTGCAGATACTGAGGTTGTCaggctgtatggtgacagaggaaggctgtggttatttgtcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgcaGCTGCTCAAACACAAACTGGAGGATCCAGACTATACACTGCAGATACTAAAtgTGGATCATGGAGGAGCGATCAGAATGTCAGCAGGACCAAGAAAATGGGCCTGTgatctcacactggatccaaacacagcacacactcgaCTCATTCTGTCGGATGAGAACAGGACCGTCACACTTGTGTATGTTTACCAGCCGTATCCTGATCACCCAGAGAGATTCGAGCTGTGCGATCAGGTTCTGTGTGGAGAGAGTCTGACTGGACGCCATTACTGGGAGGCTGAATGGAGCGGGAGGTTTGCTATTATAGCAGTGTCCTATAAAGGCATCAGCAGGAAAGAACGGAAAGGTTGTTGGTTTGGATACAATGATAAATCCTGGAGTCTGTGGTACTTTGATAACAGATTCACTGTCCGTCACAATAATAAGAAAACTAGCACAGTCCCTTCATCCTCTAATAGAGTAGGAGTTTATCTGGACTGGTCGGCCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcaaCACCACATTCACCGAACCCCTCTACGCTGGGTTCGGGGTTCATTATGATTCTTCACTGTCTCTGTGTCAGGTTTGAGTACACACAAGCACTTTTTACATTAGCTGGCACTGATGAGGTTTATTTAAGGTGCTGGCACTGATAGGCTCGTCGGTAGGCCTTCACCGGACGGGTTTTGCAGTAGTCTGCCGTTAGCTTGAACACTGTTTGGTGACCTTTTGGGTGTTTTGGGAGTTGAAGAGAGACACCTTTTTCTGGTGCTCTGCTTCTTCCTGGGatgtgtctgtatttatgtGAGGTTGTGACAGACATAGAGACCTTTGGGAGGAGCTTCAGAGCTTTCTTCAGTTCAGAGCAGGAACCAGATATATATAACAAAcgcaaataaagaaataaaacgcCTTGTGAATTTAATAGATGATATGTATCAGATGTGTAACAGAATctagtatttcatttattgcaaACACATTGCAGGTATtttaacatactgtaaaaaGAGCATATTGTTATTGTCCACAtcttcataataaaaatctaaatgcaatCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11218 lncRNA downstream 59263 29015665 ~ 29017156 (-) True G7591
TU11205 lncRNA downstream 95301 28971894 ~ 28981118 (-) True G7579
TU11154 lncRNA downstream 131801 28943997 ~ 28944618 (-) False LOC122324333
TU11146 lncRNA downstream 274754 28792644 ~ 28801665 (-) True G7551
TU11145 lncRNA downstream 275563 28790466 ~ 28800856 (-) True G7550
TU11167 lncRNA upstream 29560 29115018 ~ 29131947 (-) False G7563
TU11201 lncRNA upstream 30038 29115496 ~ 29124052 (-) True G7575
TU11169 lncRNA upstream 33545 29119003 ~ 29132092 (-) False G7563
TU11224 lncRNA upstream 47010 29132468 ~ 29152545 (-) False LOC122362981
TU11200 lncRNA upstream 71386 29156844 ~ 29158718 (-) True G7574
XM_043264729.1 mRNA downstream 1723 29072735 ~ 29074696 (-) True LOC122362918
XM_043259012.1 mRNA downstream 10872 29062167 ~ 29065547 (-) True LOC122358964
XM_043219713.1 mRNA downstream 14745 29050774 ~ 29061674 (-) False dnm2b
XM_043216551.1 mRNA upstream 386 29085844 ~ 29088593 (-) True LOC122322914
XM_043218371.1 mRNA upstream 3688 29089146 ~ 29090774 (-) True LOC122324118
XM_043219910.1 mRNA upstream 16228 29101686 ~ 29111713 (-) False LOC122325037
XM_043219192.1 mRNA upstream 41462 29126920 ~ 29128828 (-) True ubl5
XM_043264857.1 mRNA upstream 48486 29133944 ~ 29137075 (-) True LOC122362981
TU11106 other downstream 550868 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 629828 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 684366 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 827896 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 999975 28074648 ~ 28076444 (-) False LOC122349330
TU11196 other upstream 20856 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 41313 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 41313 29126771 ~ 29128775 (-) False G7563
TU11193 other upstream 216349 29301807 ~ 29310598 (-) True G7569
TU11395 other upstream 340836 29426294 ~ 29434213 (-) False LOC122354733

Expression Profile