RNA id: XM_043255722.1


Basic Information

Item Value
RNA id XM_043255722.1
length 3523
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122356692
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28645661 ~ 28652183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTTCTACATCAAGTAATGCAAAAATGACTTCTGACCCAAGGACCACCAGAAAGAAGCGACAGAGATCAGAATCTCCAGAACCCAGCAGGGTGTCTCTGAAGAGTAACAGGTCCATGGATCAACCCCCTAGACTCAGTGACTCAACTGTGACCCCTCACCCTCTTGGTAAAGATATACATGACCAGAGTCTATTTGTGCCATCCACTTCATCCCACAATCAGACCCATGTCAGGCAGGACAAAGGTGAAGCCATAGGGCAGAAACACAATCTGGAGTCTGGAGACCTGCAGCGAGTTAAAGACAGTCACAAAACCAGTTTGAAGAAGAAACATGAGAAATTATTTGAGGGAATCAAACTCCAagctaaagaaacatttgtgaATATGATCTACACACATCTCTACATCataaagggagagagagaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGGACAAAACACTCACAAGACACTATTGACTGCAATGACATCTTTAAAGCCTCACCTGAACCAGGATGTGAGGAGAAAGACCAGATCaagactgttcttactaaaggcTTCGCTGGAATCggaaaaactgtctctgtgcagaagttcattctggactgggcagagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcCGAGATCATCAGTACAGTCTTCAGAGACTTCTGCTGGACTTTCATCCTGAACTTCAAGATCTGTACTCAAAGATCTATGAGGAGTGtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGTCAAACCTCATGAAAGGAGAgctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctCCAAATACATCAACCGTCTGACAGAAATTCAAGGATTTAATGAACCTCACaaggaggaatatttcaggaagagAATCAGTGACCAGCATCAAGCCAGCAGAATAATCTCACACATCAGAAGAGCAAGAAGCctccacatcatgtgccacatccctgtcttctgctggatctcatccaCTGTGCTTCAGAAGTTCCTGGAAGAAGATCTGAGTGCAGAAATccctcaaactctgactgaaatgtacataCACTTCCTGCTGATTCAGATCAACATGAGGAACCAGAAGTATGAAGAAAGAGATCCAGAGAAACTCCTGCAGTCCTACAGAGAAGTGATTGTGAAGCTTGCTAAAGTTGCTTTCAAACAGCTTATGAAAGGTAATGTAATGTTCTATGCAGAGGACCTGATTGAGAGCGGCATAGACGTCACTGATGCCtcagtgtattctgggatttgTACTGAGATCTTTAAGGAGGAGTCTGTGATTCATCAGAGAAAAGTATACAGCTTCATTCATCTGAGTGTTCAAGAGTTTCTTGCTGCTTTCTATGTCTTTTACCATTATGTGAATAATACGACTGATACATTGCAGTTTTGTGATGTGATACATAATCTGCATAGAGATGCAGTAGATAAAGCCCTTGAGAGTGAGAATGGACAGCTCGATCTGTTCCTCCGATTCTTGCTGGGCGTCTCACTGGAGTCCAATCAGATACTCTTACAGGATCTACTGACACACACAGTGAACAGCTCAGAGAGCATCAGGAGAACAACACAGTACATTAAAGAGAAGATCAGAGATGGACATGACCTCTCCACTGAAAGATCCATCAATCTTTTCCTCTGTCTGCTGGAAGTGAAAGATTATACTCTGTCCAGAGAGATTCAGGAGTTTGTGAAATCAGACAAACACTCAGAGAAGAAACTCTCTCCTGCTCACTGCTCAACAATCTCCTACATGCTTCAGATGTCAGAGGAAGTGTTGGATGAGCTGGACCTCAAGAAATACAACACATCAGATGAGGGAAGAAGAAGACTGATACCCGCTGTGATCAAATTTAGTAAAGCTTTCCTTGCAGGTTGTAATATCACTGTTCAGTGTTGCGAGAGTTTGTCATCAGCTCTTCAATCTTCAAACTCTGGCCTGAtagagctggatctgagtaacaatgacctgcagggaACAGAAGtaaagctgctctctgatggactgaagaatGCAAACTGTCAGCTGCAGATACTGAGATTATCTGGCTGTATGATAacagaggaaggctgtggttatttgtcttcagctctgagttcaaaccccTCTTACCTGAGAGAgttggatctgagctacaatcacccaggagattcaggagtcCAGCTGCTCAGCGACAGGCTAGAGGATCCAAACTGTAAACTGGTGAAACTCAATTTTGACTATGGAGGACATTTTAGAATCAAACCAGGACTAGGAAAATATGCCTGTGATCTCACACTGGAtctatacacagcacacactcaaCTCATCCTATCCAaagactacaaaaaaattacatgtgtTAAAGATCATCAGCCGTATCCTGTTCATCCAGACAGGTTTGATGATCGGGAGCAGGTTCTGTGTAGAGAGAGTCTCactggacgctgttactgggaggttAAATGGGAAGGCTCGGGTCATGTAGCAGTGGCATATAAAGGAATCAACAGGAAAAGTGGGATTGACAGTTGGTTTGGTCTCAATGAAATGTCTTGGAGTATTTACTGTTCTGATACAACTTATACTGTCtggtacaataataataacaaagacGTATTTGGCCCTTCATCCCGCTCTAATAGAGTAGGAGTTTATCTGGACTGGTCGGCCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcaaCACCACATTCACTGAACCCCTCTACGCTGGGTTTGGGGTTTATCCTCAAGCTTCAGTGTCTCTGTGTCAGATTTAACAACCTCTTGTGAGGATCAACAGAGACACATACAGAATGCCATTTACACATTGgagcaaaacaattaaaagttatttgcaatttatatatctttaattGGCAACTTTCTCACAGTTATGACATCAGTTTATAGTCACAATTGTAAATGTAAGATGTAGAGTACTTATGAGGTTGCACTGTGAGATAAAGTCTGATTACAATATAAAGTTGCAGTTCTGAGatgtatagaaataaatgtcaaattatgAGTTATATGAAGTTATACGTGTACAGTACACGTGTACAGCTATTGATTGTCTTCACTTAAATATTGAGCACTAGGCAGTTTGAAGTTGTAGAAATGTCTGTGAGgtgtttgaatgaaaatgtgaaaaccaGTGGTGCTCAGTGCATTAGCTTCACCTTCATCAAGCTGTGGAGCTTTCTGCagctaaaagaaaaactgtCAAACCTTTCACAATTATATCACAGACTCACACTTTGTTTGACAGAAGAGAAAATTATGTTaatgaagtttatttattaccaataaagttttagatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247505.1 lncRNA downstream 156152 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 214033 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 228090 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 228125 28415443 ~ 28417536 (-) False LOC122326209
TU11095 lncRNA downstream 235353 28408242 ~ 28410308 (-) True G7516
TU11120 lncRNA upstream 18738 28670921 ~ 28672634 (-) True G7535
TU11130 lncRNA upstream 91261 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA upstream 91261 28743444 ~ 28784099 (-) False G7541
TU11133 lncRNA upstream 91261 28743444 ~ 28807706 (-) True G7541
TU11142 lncRNA upstream 121171 28773354 ~ 28774166 (-) True G7547
XM_043256174.1 mRNA downstream 2164 28634924 ~ 28643497 (-) True LOC122356986
XM_043263065.1 mRNA downstream 18869 28614050 ~ 28626792 (-) False LOC122361856
XM_043263154.1 mRNA downstream 18869 28615819 ~ 28626792 (-) False LOC122361856
XM_043262968.1 mRNA downstream 18869 28615819 ~ 28626792 (-) True LOC122361856
XM_043245577.1 mRNA downstream 28760 28604870 ~ 28616901 (-) True LOC122349510
XM_043255379.1 mRNA upstream 1826 28654009 ~ 28663246 (-) True LOC122356533
XM_043264597.1 mRNA upstream 22250 28674433 ~ 28676825 (-) True LOC122362864
XM_043254680.1 mRNA upstream 157029 28809212 ~ 28841535 (-) False LOC122355940
XM_043254526.1 mRNA upstream 157029 28809212 ~ 28841517 (-) False LOC122355940
XM_043254605.1 mRNA upstream 157030 28809213 ~ 28841535 (-) False LOC122355940
TU11106 other downstream 120110 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 199070 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 253608 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 397138 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 569217 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 397560 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 397560 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 454131 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 474588 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 474588 29126771 ~ 29128775 (-) False G7563

Expression Profile