RNA id: XM_043255835.1


Basic Information

Item Value
RNA id XM_043255835.1
length 4413
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122356751
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28585817 ~ 28611362 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAGACTGTAATAGTGATCTGTGCCACGAGAGGGACAAAGAGAGGAAAGAAGTAAACAACTCACCTGCAGCAGGTGACTATAAGGAAGTGAAAGTAATCGAGGTGAAGGGAGAGACGCCATTTCCAGGCTTTAAacgtctgtctgtttttcgTGTTTTTGAAGCAAGAGCCATGAGTCTCTGTGAGGAGAAAGAAGATGAGAATGACTCCATGAAGAATATGCCTTCTAAATTTACTGATGCTcccatgacctctgaccccagCAGCATCATCTGGAGGAGGAGATCAAGATCAAAGTCTCCTGATCCCAGCATAGCAAGCATGGACCCACCCGAAGCTTTCAATAATGAAGTGACCCCTGACCCTCTTGAGACTGAAGATCTACGGAAATCAGTGTATGATGACCTTCAGAGAGTGATAGACCACAACAAAACCAGCTTAAAGAACAAGTATGAACGATTATATGAGGGAGACAAAGTACACGACAATGAAACACTCCTAAACAAGATCTACACACGACTCTACATCATTGAAGGAGAGAGTGAAGGAGTGAATAAAGAACATGAGGTTTTACAGAtggaaaaaacagcacaaacaaatgactcacAAGAAACTCCTATTTACTGCAATGACATCTTTAAAGCCTTAGCTGAACCGGGATGTGAGATGAAAGACCAGATCaagactgttcttactaaaggcatcgctggaatcggaaaaacagtctctgtgcaaaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcAGAGATCATCAGTACAGTCTTCAGAGACTTCTGCTGGACTTTTATCCTGAACTTCATGATCTGGACTCAAAGATTTATGAGGAGTGtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGTCAAACCTCATGAAAGGAGAgctgcttccctctgctctcatctggatcacatccagaccagcagcagccaatcagatcccttCCAAATACATCAACCGTATGACAGAAATTCAGGGATTCACTGAAcctcagaaggaggaatattttAGGAAGAGAATCAGTGACCAGCATCAAGCCAGCAAAATCATCTCACATATCAGAAGAGCAAGAAGCCTCCacatcatgtgtcacatcccTGTCTTTTGCTGGATCTCATCCACTGTGCTTCAGAAGCTCCTGGAAGAAGATCTGAATGCAGAAATccctcaaactctgactgaaatgtacatccacTTCCTGCTGATTCAGATCAACATGAGGAACCAGAAGTATAAAGAGAGTGATCCAGAAAAACTTCTGGAGTCCAACAGAAAAGTTATTGTGAAACTTGCTGAATTGGCTTTCAGGCAGCTGATGAAGGGCAATGTGATGTTCTATGAGGAAGACCTGATTGAGAGCGGCATAGATGTCACTGAAGCATCAGTGTACTTTGGGATTTGCACTGAGATCTTTAAGGAGGAATCTGTGATTCATCAGAAGAAAGTCTACAGCTTCATTCATCTGAGCATTCAGGAGTTTCTTGctgctttctttgtgttttactACCATGTAACTGCAACTATGGAAAGACTTGAGAATTTTGCTTCAGTACAAAATTTGCTCATAGGTGCAGTAAATAACACAATTGACAGACAGAATGGGCAACTGGATCTGTTCTTGCGGTTCCTGCTGGGCGTCTCACTGGagtccaatcagagactcttacaggatctactgacacacacagagaacagctCAGAGAGTATCAGGAGAACGACACAGTACATTAATGAGAAGATCAAAGATGGACATGACCTCTCCACTGAAAGATCCATCAATCTGTTCCTTTGTCTGCTGGAAGTGAAAGATCAGACTCTGTACAGAGAGATTCAGAAGTTTGTGAAATCAGACCAACACCAAGAGAAGAAACTATCTTCTGCTCACTGCTCAACAATCTCCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGACCTCAAGAAATACAACACATCAGATAATGGGAAAAGAAGACTGATACCAGCTGTGATCaactgcagaaaagctctaCTTACTGACTGTAGTCTCACTGCCCAAGATTGTGAAGTTTTATCATCAGCTCTACAGTCCTCAAGAGAGCTAAtagagctggatctgagtaacaatgacctgcaggattcaggagtgaaactGCTCtgtgatggactgaagagtccaaattGTCATCTCCAGAAACTGAGgttgtcaggctgtatggtgacagaggaaggctgtggttatttgtcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgcaGCTGCTCAAACACAAACTGGAGGATCCCAACTATGAACTGAAGATACTCAATTGCAACCATGAAGGACCTTTCAGACTTACACCAGGACTGAGAAAATATGCTTGTGATCTTACactagatccaaacacagcgcATGTTAAACTCTCCCTTTCTGAGGACAATAGAAAGGCAACATATCTTAAGGAGGAGCagtcgtatcctgatcatccagacaggtTTGAGAGCTTTGAGCAGGTTCTTTGTGGAGAGACTCTGtctggacgctgttactgggaggttGAATGGACTGGAGCTAAGGCTGATATAGCAGTGACATATAAAGCACTCAGCAGGAAAGGAGGGAATGATTGTTGGTTTGGATGCAGTGATAAATCCTGGAGTCTGTACTGCTCTTCTGATGGATTTACTTCCTGGCATAATAATGTGAACACTAGCGTACCTGTCCCATCACCCTATTCTACAAGAGTAGGAGTGTATCTGGACTCGTCGGCCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcaaCACCACATTCACCGAACCCCTCTACGCTGGGTTTGGGGTGTTTGAGTCTGAACTGTCTCTGTGTCAGATTACACAATCTGCTTTGGGAAGGAACTAAATCACACATTTGTTGCTTATAATTTGGCTTTTAATGCATCTAATTGCTAATGAACATCTAAATGGTGACTGAATTTGTTTAAACTAGATGCTTTAAAAGTACTATGTCATACTGGAAATAAAAGTGAGTGTGCAGCGGTTTGGTTGGTTAATGGGAACACACATTTTCTGCCTATGtctgcaaaattaaaaatgcataaaaacatatgaaatgcttttaaaaactaaaaactaaaaatgcagaaagttttCTATAAGTAGTAGGTTTAGGAGTCCAGTTGgtttaaacacaaatatatgaTAGAAAATAcaagttataaaaaataaaaaccattatacCGGCCATCATATACACGTTAGATAAACCATTCCCTTTGTGATTACAGAAGAGCAATATGTTCctataagtataaatataagttaTTCTGACTGATGAACAGAAACTATTGTTTCCAAACAAACACTGAATCTTCCTCAACAAACatctaaaaactatttttcacgAATATCTAAAAACTCAAACTGCATAATATTTTCTGGTGACTCTTAAGAGTAGGGTTGGTTTAGGTTTATTTGGTTTGTATAGAATAAAAACCATTGTATCAGCCGTTATATTATATAACCATTATACCAGACTCTTTTATCAGGATTTACTAGAGTACCGCTGGAGAAGGATTCCAGAAGAGTAATCTGTTCCACTACATGCTGTTTAAACGAAACATATTCTGACTGAAGAACAGGAACTATTGTTCCTGATATCAGGAGTCATCTGTTATTCTGGGTGCTTTATTGGAGACTTAGCGTTGTTCTGTAGAAACACTGGGAGCTCTTATAAAAGCTACTGTATATTTGGTCATTGTTTCAGAGGATTCACAGCCTCGTTTTCATGCTACTGTATCATCAACAGCTGTTAGATCAATGTATTTTCTCTATgttcagaatattaaaatatttaatatatttttgtaattatagctttaattatataatgttcTTAAATACTGATTAATCCATTCAAGTGTTTAATGactgtttcttcttcttgtctCTTGTCATTACAAAACTGTAAGCTAAAAccacaattgtttttttatatttttatatttatattgttttacatttcttttacttGTTTTTGGATATGCCAAAACGTTTGGTCAAGCAAGTTAATATGTAGTTAAATAGCTTATTTCATGGTCAAATCAGATGCAAATGTCTCTGTAATGTAACAGCTGCATGGTTTAACACAGATATATTGGTTTTCTTCAATAAATCTTTGCACGTGATGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247505.1 lncRNA downstream 96308 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 154189 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 168246 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 168281 28415443 ~ 28417536 (-) False LOC122326209
TU11095 lncRNA downstream 175509 28408242 ~ 28410308 (-) True G7516
TU11120 lncRNA upstream 74800 28670921 ~ 28672634 (-) True G7535
TU11130 lncRNA upstream 147323 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA upstream 147323 28743444 ~ 28784099 (-) False G7541
TU11133 lncRNA upstream 147323 28743444 ~ 28807706 (-) True G7541
TU11142 lncRNA upstream 177233 28773354 ~ 28774166 (-) True G7547
XM_043245543.1 mRNA downstream 79279 28496270 ~ 28506538 (-) True LOC122349482
XM_043245530.1 mRNA downstream 89670 28493696 ~ 28496147 (-) True LOC122349476
XM_043245516.1 mRNA downstream 97315 28486768 ~ 28488502 (-) True LOC122349470
XM_043254998.1 mRNA downstream 202942 28376999 ~ 28382875 (-) True LOC122356343
XM_043262075.1 mRNA downstream 261801 28321369 ~ 28324016 (-) False LOC122360989
XM_043245565.1 mRNA upstream 1897 28598018 ~ 28603208 (-) True LOC122349500
XM_043245577.1 mRNA upstream 8749 28604870 ~ 28616901 (-) True LOC122349510
XM_043263065.1 mRNA upstream 17929 28614050 ~ 28626792 (-) False LOC122361856
XM_043263154.1 mRNA upstream 19698 28615819 ~ 28626792 (-) False LOC122361856
XM_043262968.1 mRNA upstream 19698 28615819 ~ 28626792 (-) True LOC122361856
TU11106 other downstream 60266 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 139226 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 193764 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 337294 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 509373 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 453622 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 453622 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 510193 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 530650 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 530650 29126771 ~ 29128775 (-) False G7563

Expression Profile