RNA id: XM_043256992.1


Basic Information

Item Value
RNA id XM_043256992.1
length 2915
RNA type mRNA
GC content 0.58
exon number 16
gene id LOC122357555
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29822257 ~ 29832148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCcatcagtgagagagagagagagagagagacagagagagagagacagagagagagagagagttcaacaaTATTAGATGAATGaaacataaagaaagaaagacagacgaAGGAACACGAGAAAATACAGCACAGCCTCAGACTCATGAACGCTCGCTCGATCGCGCGCTGGCTGACGCAGCTCGGGCTCGCGCAGTACACGAGCGCGCTGGAGAAGCACGCCTACGGCCTCGAGggtcTCCTATTAGTAACAGAAGATGATCTGAGACTGATGGGAGTTGAAGATCCAGATCACAGGGCGACCATCATAAATGAGCTACAGAAGCAGCAGCCGGAGAaagAGAAGAACCCCGTGGTGATGAGGGACGCTGTGAGCCGCAAGCACTCGTCTCTGGACCTGCTCAAACCCAGCGCTGACCTCTTCCGTCACAGCATTGTGCCTCGGCTGCGTCGCCGTGACAACCAGCGAGTCTCCGCCTCCTGCCTCCAGCTCCCCTCCCACACCCCCGAAGACCACACCCCCTCCACCAGACACAAACTCAGCAGGAGGAAGAGTGTGACGGCCTTCATCAGTCAGGTGTTCTCAGGCCTGAAGGACATGGACTCTCTGAAgaaggagctggaggaggagctCAAACTCAGCACTGAGGATCTGAGGAGTCACGCCTGGTATCACGGACAGCGGCAGCGCgagggagCGGAGCAGTTGTTGAGTAGAGACGGGGAGTTTCTGGTGCGTGACTCCAGCTCCAGTGCGGGTGAATACGTCCTGAGCTGTATGTGGAGAAATCAACCCATGCACTTCAAGATCATACGCATCGTGCTGCGACCCAAACAGggttACACTCGGGAGCTCTTTCAGTTTGAGAACGAGCAGTTTGATAATATTCCAGCATTAATTCGCTTTCACGTCGGCGGGCGGCGTCCCATCTCGCATTCCACCGGAGCCATCATCTTTCAGCCAATCACACGCACTCTGCCTCTACGCATCATCAGCGAGCGCCAGGCTGCGAGGTCGTCAAGCTCCTCCCTCCTGTCACGGGCTCAGAGCAAGAGGCGGAGCCTGAGCTCCTCTCAGAAAGATACACTGCAGGTCAACAGCAACAACCTGctcaggaGCGGCAGTCAGCCTGCTAATCTGGAGACAGTGGGGAGACCGCCACTACAGTCTGCTCAATCTGACAGCAACCTCCgcacagGTGTCCCACAGAGCTGTCCGTCACAGGACTCTAGCCCCGCCCCCGTCTCCCCGGTGTTCCGCACAGGAAGTGAGCCTGTCCTAAGCCCAGCCGCTTCCTGTGCCGCTCCGCCCAGTCAGTCGAGTCTCGGCGGCTGTCCTCTGCGTGGCTCTGATGGACAGCTGCATTCACGAGCTCCTCCCAAACCGCTGCGGATCTCCATCGTCTTCACCCCGACTGCGTCCGCCCCTGAGTCCGATTCCTCCGGCCTCTATGGTGAGCTGGTGCCGCAGGTCCCCATCACCATGCTGCCCAAAGGTCACGCGGCGCGGCTCCGTGCTCAGGAGCGATGGACCAGCCGCGCGCGTCTCACCGAGACCAGCTTTGGCTTCCTGGAGGCGCAGAagctggaggaggagcggcGGGAGAGCGAGGCGGTGGAGGACGAGCAGAGAGACTGGCGCTTCGAGCGGCCGCTGACCGAGACCACGTCCTGCTTCCGGCTCCACGACTTCCGCTCGCTCATGCTGCCCGACAACAACCGCCCGCTGGATCAGAGCGTCCTGCTGAAGGTCAAGGAGCTGCTGACGGACAGCGACGCCAGGACCACCGCTCTGCACATGCTCAGCGTCAACTGCCAGGTGGCCCGGGTCACGGGGGTGACGGCGGAGCAGAAGAGGATCATGGGAGTGGAGACGGGTCTGGAGCTCATCACTCTGCCGCACGGAGGCCAGCTCAGACAGGACCTGCTGGAGAGGCATCACGCGCTGGCTCTGGGCGTGGCGGTGGATCTTCTGGGCTGTACGGGGACGGTGGCTCAGAGGGCCACGCTGCTGCACAGGACCATTCAGCTGGCGCAGGAGCTGCGTAACACCACACACGACCTGTACGCCTTCTCCGCCGTCATGAAGGCGCTCGAGCTGCCGCAGGTGGCGAGGCTGGAGATGACATGGAGAGCGCTGAGGCATAATCACACGGACAGCGCCGTGGCGTTCGAGAAGAGCCTCAAACCCTTCATGAAGGCCCTGAACGAGGGCGACGacGGCGAGGCGTCGGGGCCGCTGTCTCTTCCTCACATGGTGCCGCTGCTGAGGCTGATGGAGGGAGAAGACGGCGTGGAGTCCACCGACAGAGGCTGCCAACTGCTCTACAACCTGCTGCAGTCGGCACGCAACGCCGCGCTACACGCTAACGACTGCTCGCGGCACGCTCACGGCCTGCTCTCCGCCGGATGGGAGCCAATCCCAGAGCTGCTGGAGGTGTTTCAGACGGAGTTCGCCCTTCGGCTCTTCTGGGGGCAGATGGGTGCCAAAGCCGATCGCAAGGAGCGCTACGCCAAATTCGACAGGATCCTCACGGTCCTCTCCAACAAACTGGAAGCGGACGGGAGCTCGGAGGTTTGAGCTCTGCTGGCGAGCACGGGAAGTCCAGCCACTTCTGAGCTTTATATTCCTGTCATTTACATGATAAAAACAGACCCGACGCCAGAGCACGAGCGCGAGGTGAAGCGTGTCGGATCTCTTACTAGAAAATTCCATATTTCAGCACGCGTTAGTTTACAGTCATGATGATGTTGTTTTGAAGCTGTGATTGTTTTCATATCTGAGTGAAATTTGCTAAATCTATATGCTTACTTTCAGAGGCACACTTTCTCTTACCAAAGCATTTCTGATTTTATATGTAaagaatatatttgaatttcttaatggattaaaatggaaattaataTATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11448 lncRNA downstream 241130 29524195 ~ 29581127 (-) False G7675
TU11447 lncRNA downstream 241130 29577958 ~ 29581127 (-) True G7675
TU11467 lncRNA downstream 268671 29522899 ~ 29553586 (-) True G7686
TU11486 lncRNA downstream 273055 29547872 ~ 29549202 (-) True G7694
TU11459 lncRNA downstream 321560 29496887 ~ 29500697 (-) True G7683
TU11571 lncRNA upstream 54132 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 82520 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 186135 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 200422 30032570 ~ 30037959 (-) True G7764
XR_006251747.1 lncRNA upstream 265710 30097858 ~ 30099331 (-) True LOC122351377
XM_043218256.1 mRNA downstream 10738 29809374 ~ 29811519 (-) True LOC122324036
XM_043265106.1 mRNA downstream 13674 29806587 ~ 29808583 (-) True LOC122363120
XM_043258250.1 mRNA downstream 16037 29799978 ~ 29806220 (-) True LOC122358417
XM_043218492.1 mRNA downstream 30020 29786585 ~ 29792237 (-) True LOC122324192
XM_043259981.1 mRNA downstream 227432 29589963 ~ 29594825 (-) True ears2
XM_043245704.1 mRNA upstream 13477 29845625 ~ 29848380 (-) True LOC122349594
XM_043249230.1 mRNA upstream 323561 30155709 ~ 30165350 (-) True LOC122351861
XM_043249238.1 mRNA upstream 323561 30155709 ~ 30161913 (-) False LOC122351861
XM_043249248.1 mRNA upstream 323561 30155709 ~ 30161907 (-) False LOC122351861
XM_043247807.1 mRNA upstream 475815 30307963 ~ 30314051 (-) True LOC122350995
TU11380 other downstream 345919 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 346869 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 348696 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 360053 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 525931 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 526247 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 527672 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 528458 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile